Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonorchis_20sinensis_20[genbank_20GCA_5F000236345.1_202011-11-28] 4,348 sequences; 547,288,241 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq1067 720 0.0 >seq1067 Length=4963 Score = 720 bits (798), Expect = 0.0 Identities = 434/457 (95%), Gaps = 0/457 (0%) Strand=Plus/Minus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4786 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 4727 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4726 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 4667 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTA 5668 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4666 CGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTA 4607 Query 5669 GTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5728 ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 4606 GTGCTTTACGGCACCTCGACCCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGC 4547 Query 5729 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 5788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4546 CATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTG 4487 Query 5789 GACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTAT 5848 |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct 4486 GACTCTTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGTCTATTCTTTTGATTTAT 4427 Query 5849 AAGGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGATTTAACAAATATTTA 5908 |||| ||||| | |||| || || |||||||||||| ||||||||||||||| ||||| Sbjct 4426 AAGGGATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTA 4367 Query 5909 ACGCGAAATTTAACAAAACATTAACGTTTACAATTTA 5945 ||||||| |||||||||| ||||||| |||||||||| Sbjct 4366 ACGCGAATTTTAACAAAATATTAACGCTTACAATTTA 4330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20389402603584