Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydatigera_20taeniaeformis_20[genbank_20GCA_5F000951575.1_202014-09- 25] 30,091 sequences; 103,664,560 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq20860 486 7e-134 >seq20860 Length=775 Score = 486 bits (538), Expect = 7e-134 Identities = 485/626 (77%), Gaps = 2/626 (0%) Strand=Plus/Minus Query 1319 CCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACTTCGGGATGAAACTACTCCCAATG 1378 || ||||| || || |||| |||||||||||||||||||||||||| | ||| ||||| Sbjct 758 CCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATG 699 Query 1379 ACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGTGGGTTACGACGTGACCCCG 1438 || | ||| || ||||||| ||||||||||| ||| | |||||||||||| ||| ||| Sbjct 698 ACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCG 639 Query 1439 TTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGCAA 1498 |||||| | || |||||||||||||| || | |||| | |||||||||||| ||| Sbjct 638 TTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTT 579 Query 1499 TCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATGCGC 1558 |||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||| Sbjct 578 ACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGC 519 Query 1559 AATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTTTATCGCTTCAATGACGCAG 1618 || || || || || | |||| ||| ||||||||||||||||| ||||||||| Sbjct 518 GCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAG 459 Query 1619 AAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTACGTTACTAATGCAGGAATT 1678 || ||| || | |||||||||||||||| | ||||| || || ||| ||||||||| Sbjct 458 AAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATT 399 Query 1679 GCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAACTTCA 1738 || |||| |||||| |||||||||||||||||||||| ||||||||| || ||| Sbjct 398 ACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCG 339 Query 1739 ATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTCGCCATCATCTCAACG 1798 | || ||| | |||||| |||||||| || |||||||||||||| || |||| Sbjct 338 ACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACG 280 Query 1799 -TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAATATGATGGGCGCTCTT 1857 | | |||| ||||||||| | ||||| || || ||||| |||||| | ||| | | Sbjct 279 ATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTC 220 Query 1858 CTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAAGAATCAATGCTTGAC 1917 | ||||||||||| | ||||| |||||| || ||||| | ||| || | ||||| Sbjct 219 GTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGAC 160 Query 1918 ATTCTAAATGAACGTGGCCTATTATC 1943 ||| |||| || ||||| || |||| Sbjct 159 ATTTTAAAAGAGCGTGGATTACTATC 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17437459088565