Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq6289 1326 0.0 >seq6289 Length=2689 Score = 1326 bits (1470), Expect = 0.0 Identities = 1772/2446 (72%), Gaps = 38/2446 (2%) Strand=Plus/Minus Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521 |||| || |||||| | ||||||| | |||||| |||||||||||||||||||||| Sbjct 2426 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 2367 Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581 |||||||| ||| || | || | ||| | | || || | || ||| Sbjct 2366 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 2308 Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640 | || | || ||| | | | | || || ||||| ||||| |||| || || || Sbjct 2307 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 2248 Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700 || | || || ||| |||| |||||||| |||| | | |||||| || |||||| Sbjct 2247 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 2188 Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760 || || || | |||||| | |||| | || |||||||| ||||| || ||| || Sbjct 2187 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 2128 Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820 | || |||| | |||| || || ||||| || | || || ||||| ||| ||| || Sbjct 2127 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 2068 Query 821 TATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACT 880 |||||||||||||||||| | |||||||| || |||||||||||||||||||| ||| || Sbjct 2067 TATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCT 2008 Query 881 GCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCA 940 ||||| |||||| || |||| ||| |||||||||||||||||||||||||||| Sbjct 2007 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 1948 Query 941 GAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTT 1000 |||||||||||| | || ||||| |||||||| || ||||| ||||||| |||||| Sbjct 1947 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTT 1888 Query 1001 CCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAAT 1060 ||| ||| | ||||||| || ||| | |||||||| || || ||||| Sbjct 1887 CCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAAT 1828 Query 1061 AGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAA 1120 ||||||||||| |||||||||||||||||| ||||||||||||||| || ||| | || Sbjct 1827 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1768 Query 1121 GACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAA 1180 ||||| || || || |||| ||| | |||||||| || | || ||||| || |||||| Sbjct 1767 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAA 1708 Query 1181 GCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCAGAT 1240 |||||| ||||||||||| || ||||| || |||||||||||||||||||| |||||| Sbjct 1707 GCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGAT 1648 Query 1241 ATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAA 1300 || ||| | || | ||||| ||||| ||||||||||||||| ||||| |||||||| Sbjct 1647 ATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAG 1588 Query 1301 ATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAA 1360 | || | |||||||| |||||||||| ||||| ||||| ||||| |||||| Sbjct 1587 CTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAA 1528 Query 1361 CTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGTTAC 1420 || | ||||| | | ||||| |||| | | || |||| ||| | |||||||| Sbjct 1527 ATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTAC 1468 Query 1421 GACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTCAAATCGAGG 1480 |||| ||| ||||||||| | || |||||||||||||| || | |||| | | || |||| Sbjct 1467 GACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGG 1408 Query 1481 CTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACGAATCTGCTA 1540 |||| ||| |||| ||||||||||||| |||||||||||||||||| |||||||| Sbjct 1407 CTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTC 1348 Query 1541 AAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTTTTATCGCT 1600 ||||| |||||| || || || || || | |||||||| ||||||||||||||| Sbjct 1347 AAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCT 1288 Query 1601 TCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACTACGTTGCT 1660 || ||||| ||| |||||| | |||||||||||||||| | ||||| || ||| | Sbjct 1287 TCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGAT 1228 Query 1661 TCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAA 1720 ||||||||| || |||| ||||||||||||||||||||||||||||| |||||| Sbjct 1227 AAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAA 1168 Query 1721 TGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCC 1780 |||| |||||| | || ||| | |||||| ||||||||||| |||||||||| Sbjct 1167 TGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCC 1108 Query 1781 ATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAAATACTTAAATATG 1839 |||| || |||| | ||| ||||||||||||| | || |||||||| | | |||||| Sbjct 1107 ATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATG 1049 Query 1840 TTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAACAA 1899 | || | || ||||||||||||| | || || |||||| || ||||||| | | Sbjct 1048 CTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGAT 989 Query 1900 TCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGACACAAAC 1959 || | ||||||| | ||||| ||||| || |||| || ||| ||| Sbjct 988 TCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTG--TTCAAC 931 Query 1960 CAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCAAAC 2013 ||| | ||| || ||||| | | |||| || ||| | ||| || || || Sbjct 930 CACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGAC 874 Query 2014 TGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGACGA 2073 ||| | || ||||| || || ||||| || ||| | ||| | || || || || || || Sbjct 873 CGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGA 814 Query 2074 TTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG 2133 ||| || || | || | || || ||||||||||| ||||| || || ||||| || Sbjct 813 TTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCG 754 Query 2134 -TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTCCTG 2192 ||| | ||||||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct 753 CTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTG 695 Query 2193 CTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACATCCAAA 2252 ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 694 CTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAA 635 Query 2253 CCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTGAAC 2312 | |||||||||||||||||||| ||||| ||||| |||||||| | ||||| || || | Sbjct 634 CGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGC 575 Query 2313 GCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGGAAACAAAG 2372 | || ||||||||| ||||| ||||||| || || | | ||| ||||| ||||||| | Sbjct 574 GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTG 515 Query 2373 ATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGGTGTCATGT 2432 | || | | |||| ||| |||| | ||| || | ||||| || |||| || |||| Sbjct 514 ACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGT 455 Query 2433 AAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT----ATGTAATGAAAAAATCA 2488 || | | | | || | || || | | || | | Sbjct 454 AATG--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCG 403 Query 2489 ATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCGGAACACAA 2548 | || | || ||||| ||| || || ||||| ||||||||||| || |||| Sbjct 402 TTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAA 343 Query 2549 TACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAATGTCTAAC 2608 | ||| || | ||| | ||| ||| || || |||||| || |||||||| Sbjct 342 TTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGGATA-AATTATGTCTAAT 292 Query 2609 GTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACCTTGTCTTTGAGGCTGGT 2668 ||||||| || || ||| | || |||||| | || || |||| ||| |||||| Sbjct 291 ATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGT 232 Query 2669 AAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCTTTCGAG 2728 | ||||| || || | || || || || || | | ||||| ||||| |||||| Sbjct 231 CAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAG 172 Query 2729 TGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTTGACTCA 2788 || ||||||||| | ||||| || || | ||||||||||| ||| ||||||| Sbjct 171 ATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCT 112 Query 2789 CGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAGTGGATT 2848 || || || ||| |||| ||| |||| || ||||| | || ||| | ||||||||| Sbjct 111 ACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT 52 Query 2849 AACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGTTA 2894 || || ||||||||||| ||||||||| | ||||| || |||||| Sbjct 51 AAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17731701877300