Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_014928.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value seq3405 98.7 1e-17 >seq3405 Length=9822 Score = 98.7 bits (108), Expect = 1e-17 Identities = 174/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Plus Query 466 GATTTCAAGACTGAGGTTTTTTATTACTGGGGGCCGCCAGGATCTGG-----GAA-ATCT 519 || ||||| || || |||| ||||||||||| || ||| || | || ||| ||| Sbjct 8611 GACTTCAAAACAGAATTTTTCTATTACTGGGGACCACCACGAACAGGAACAGGAATATCA 8670 Query 520 AGAAGAGCGCTTGAGGAAGCGAGGCAACTTGAC-GGAGAATCCATATACTACAAACCCCG 578 || ||| || ||||| | | | || |||||| | |||||||||||||| || Sbjct 8671 AGGCCAGCATACGACGAAGCAAAGATA----ACAGGAGAAGCGATATACTACAAACCACG 8726 Query 579 AGGATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTATAATAGACGACTTCTATGG 638 ||| ||||||||| || |||||||| |||| | | |||| ||||||| ||| | Sbjct 8727 TGGAAAATGGTGGGACGGATATGAACAGCAGCCAAATATAATAACTGACGACTCCTACGC 8786 Query 639 ATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTACCCATACAAGGTACAAAT 698 |||| | || ||||| | || |||||| ||||| | || | ||| ||| ||| Sbjct 8787 CTGGACACCATATGACGACCTACTAAAAATACTGGACAGATATCACTACCGCCTACCAAT 8846 Query 699 AAAAGGAGGAT 709 |||||||||| Sbjct 8847 TAAAGGAGGAT 8857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5493587962020