Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_014929.1 Length=1703 Score E Sequences producing significant alignments: (Bits) Value seq3405 89.7 5e-15 >seq3405 Length=9822 Score = 89.7 bits (98), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 486 CTACTACTGGGGACCACCA------GGCACGGGAAAATCACGACGAGCTCTGGAAGAAGC 539 ||| ||||||||||||||| || || |||| |||| | | ||| || ||||| Sbjct 8631 CTATTACTGGGGACCACCACGAACAGGAACAGGAATATCAAGGCCAGCATACGACGAAGC 8690 Query 540 ATCCCAAATCAACAGCAATAGT-ATATACTACAAACCACGTGGACTCTGGTGGGACGGTT 598 | | || ||||| | || ||||||||||||||||||||| ||||||||||| | Sbjct 8691 AA---AGAT-AACAGGAGAAGCGATATACTACAAACCACGTGGAAAATGGTGGGACGGAT 8746 Query 599 ATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATAAAGTACGACGAAC 658 || | || || |||| | || | ||||| | ||||| |||| | || ||||| | Sbjct 8747 ATGAACAGCAGCCAAATATAATAACTGACGACTCCTACGCCTGGACACCATATGACGACC 8806 Query 659 TCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAAAGGAGGAT 709 | || |||||| ||| | || | || ||| ||| |||||||||| Sbjct 8807 TACTAAAAATACTGGACAGATATCACTACCGCCTACCAATTAAAGGAGGAT 8857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5340010663140