Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_020206.1 Length=1719 Score E Sequences producing significant alignments: (Bits) Value seq3405 111 2e-21 seq995 78.8 1e-11 >seq3405 Length=9822 Score = 111 bits (122), Expect = 2e-21 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 952 TACGTTGCTTGTAATCCATATTCTCCT--ACTTGTAAATTCCTCGTATCCCCCTTTTACT 1009 || |||| | |||||||||| ||| | | | | | ||| |||||||| ||||| | | Sbjct 8901 TATGTTGGTGGTAATCCATACTCTTTTGGAATAGAATATT--TCGTATCCTCCTTTAATT 8844 Query 1010 GGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTTATCCATCCG 1069 |||| ||| | |||| ||| |||||||||||| ||||| || | |||| || Sbjct 8843 GGTAGGCGGTAGTGATATCTGTCCAGTATTTTTAGTAGGTCGTCATATGGTGTCCAGGCG 8784 Query 1070 TAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCACCATTCTCCGCGT 1129 ||| ||||||| |||| | || || || | |||||||||||||||| ||| ||| Sbjct 8783 TAGGAGTCGTCAGTTATTATATTTGGCTGCTGTTCATATCCGTCCCACCATTTTCCACGT 8724 Query 1130 GGTTTGTAGTATAT 1143 |||||||||||||| Sbjct 8723 GGTTTGTAGTATAT 8710 >seq995 Length=45692 Score = 78.8 bits (86), Expect = 1e-11 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1015 TTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTTATCCATCCGTAGAA 1074 || |||||| |||| |||||| ||||||| || ||| || | |||||||| ||||| Sbjct 29253 TTAGTATGGATATCTGTCGCAAATTTTTAATAATTCATCGTAAGCTATCCATCTGTAGAG 29312 Query 1075 GTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCACCATTCTCCGCGTGGTTT 1134 || || || ||||| || ||||| || ||| ||||||||||| ||| | | ||| Sbjct 29313 GTTATCCATGATGACATTTATTTGTTTGTTGTAAAAGTCCCACCATTGTCCTCTAGATTT 29372 Query 1135 GTAGTA 1140 || ||| Sbjct 29373 GTCGTA 29378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5391203096100