Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_023867.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value seq3405 80.6 3e-12 >seq3405 Length=9822 Score = 80.6 bits (88), Expect = 3e-12 Identities = 147/212 (69%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 885 TCGAATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCG 944 ||| |||||||||| | | | | |||| | || | ||||| ||||| || | ||| Sbjct 8861 TCGTATCCTCCTTTAATTGGTAGGCGGTAGTGATATCTGTCCAGTATTTTTAGTAGGTCG 8802 Query 945 TCATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTT--TGTTGTTGGTATC 1002 |||||| | |||| ||||| |||| || |||||| |||| || |||| |||| Sbjct 8801 TCATATGGTGTCCAGGCGTAGGAGTCGTCAGTTATTAT--ATTTGGCTGCTGTTCATATC 8744 Query 1003 CGTCCCACCATAGTCCTCTGGGCTTGTAATATATTGAGTCTGGAGCGTG-TGCCATGGCT 1061 ||||||||||| ||| | || ||||| ||||| | ||| | || | | | ||| Sbjct 8743 CGTCCCACCATTTTCCACGTGGTTTGTAGTATATCGCTTCT----CCTGTTATCTTTGCT 8688 Query 1062 TCTTCCAATGCTGTTTTGGATTTTCCTGTTCC 1093 || || |||||| | ||| |||||||||| Sbjct 8687 TCGTCGTATGCTGGCCTTGATATTCCTGTTCC 8656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5458393164360