Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq3405 105 8e-20 seq995 87.8 2e-14 >seq3405 Length=9822 Score = 105 bits (116), Expect = 8e-20 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1031 CCTCCTTTGATCGGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTAT 1090 |||||||| || |||| |||| | |||||||| ||||| ||||||||||| ||| Sbjct 8855 CCTCCTTTAATTGGTAGGCGGTAGTGATATCTGTCCAGTATTTTTAGTAGGTCGTCATAT 8796 Query 1091 TTGATCCATCCGTAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCAC 1150 |||| ||||| ||||||| | |||| | ||| || || | |||||||||||| Sbjct 8795 GGTGTCCAGGCGTAGGAGTCGTCAGTTATTATATTTGGCTGCTGTTCATATCCGTCCCAC 8736 Query 1151 CATTCTCCTCTTGGTTTGTAGTATAT 1176 |||| ||| | ||||||||||||||| Sbjct 8735 CATTTTCCACGTGGTTTGTAGTATAT 8710 >seq995 Length=45692 Score = 87.8 bits (96), Expect = 2e-14 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1048 TTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAGAA 1107 || ||| || |||||||| |||||||| | || || ||||| ||||||| ||||| Sbjct 29253 TTAGTATGGATATCTGTCGCAAATTTTTAATAATTCATCGTAAGCTATCCATCTGTAGAG 29312 Query 1108 GTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTT 1167 || || || || ||| || |||||| || ||| ||||||||||| |||||| | ||| Sbjct 29313 GTTATCCATGATGACATTTATTTGTTTGTTGTAAAAGTCCCACCATTGTCCTCTAGATTT 29372 Query 1168 GTAGTA 1173 || ||| Sbjct 29373 GTCGTA 29378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5957519385720