Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq3405 136 4e-29 >seq3405 Length=9822 Score = 136 bits (150), Expect = 4e-29 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 538 GAATCAATTTACTACAAACCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAAT 597 ||| | || ||||||||||| | ||| | |||||||| ||||| ||||| || |||||| Sbjct 8704 GAAGCGATATACTACAAACCACGTGGAAAATGGTGGGACGGATATGAACAGCAGCCAAAT 8763 Query 598 GTTATCATCGACGATTTCTACGGATGGATCAAATACGACGAACTATTAAAAATAATGGAT 657 | || | ||||| | ||||| |||| ||| ||||| ||| |||||||| |||| Sbjct 8764 ATAATAACTGACGACTCCTACGCCTGGACACCATATGACGACCTACTAAAAATACTGGAC 8823 Query 658 AGATACCCATACAGAGTACCAGTAAAAGGAGGATACCAAATTTTTAACTCAAAAAGAATT 717 ||||| | ||| | ||||| | |||||||||||| |||| || | || |||||| | Sbjct 8824 AGATATCACTACCGCCTACCAATTAAAGGAGGATACGAAATATTCTATTCCAAAAGAGTA 8883 Query 718 TGGATAACATCTAATATCCCCATTGACCAATTATATAAACATTCCCATTTCATTCCCCAA 777 ||||| || | || || || || || |||||| ||||||| || ||||| || Sbjct 8884 TGGATTACCACCAACATACCACCGGAAAAACGCTATAAAAATTCCCACTTTGTTCCCGAA 8943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5563977557340