Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20diminuta_20[genbank_20GCA_5F000951255.1_202014-09-25] 13,910 sequences; 165,878,914 total letters Query= NC_025791.1 Length=1755 Score E Sequences producing significant alignments: (Bits) Value seq3405 116 4e-23 >seq3405 Length=9822 Score = 116 bits (128), Expect = 4e-23 Identities = 189/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 896 TCGAATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGCATTTCG 955 ||| ||||||||||||| ||| ||| | || | ||||| |||||| || | ||| Sbjct 8861 TCGTATCCTCCTTTAATTGGTAGGCGGTAGTGATATCTGTCCAGTATTTTTAGTAGGTCG 8802 Query 956 TCATACTTTATCCAGCCGTAGAAGTCGTCGATGATTACGCAATCATGTTGTTGATATCCG 1015 ||||| | ||||| ||||| ||||||| | |||| || |||| ||||||| Sbjct 8801 TCATATGGTGTCCAGGCGTAGGAGTCGTCAGTTATTATATTTGGCTGCTGTTCATATCCG 8742 Query 1016 TCCCACCATAGTCCACGAGGTTTATAGTATATGGAAGTCCCTCTTTGTTTAGCCTCCTCA 1075 ||||||||| |||||| ||||| |||||||| | ||| || || || || || Sbjct 8741 TCCCACCATTTTCCACGTGGTTTGTAGTATATCGCTTCTCCTGTTATCTTTGCTTCGTCG 8682 Query 1076 AGTGCACGCTTTGATTTTCCGGAGCC------AGGTGGTCCCCAATAGTAGTATACTTCT 1129 ||| || ||||| |||| | || ||||||||||| || ||| | | |||| Sbjct 8681 TATGCTGGCCTTGATATTCCTGTTCCTGTTCGTGGTGGTCCCCAGTAATAGAAAAATTCT 8622 Query 1130 GTTTTGAAATCACGTT-CTTTAATAGGCATG 1159 |||||||| || | || |||| | |||||| Sbjct 8621 GTTTTGAAGTCTCTTTCCTTTGGTGGGCATG 8591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5506386070260