Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq3217 820 0.0 seq592 89.7 2e-14 >seq3217 Length=1214 Score = 820 bits (908), Expect = 0.0 Identities = 919/1217 (76%), Gaps = 15/1217 (1%) Strand=Plus/Plus Query 1118 CAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTT 1177 || ||||| || || || |||| ||| | |||||||| || | || ||||| || ||| Sbjct 5 CAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTT 64 Query 1178 AAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCA 1237 ||||||||| ||||||||||| || ||||| || |||||||||||||||||||| ||| Sbjct 65 AAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCA 124 Query 1238 GATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACAATTCACTCAAAACC 1297 ||||| ||| | || | ||||| ||||| ||||||||||||||| ||||| |||||| Sbjct 125 GATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACC 184 Query 1298 AAAATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATG 1357 || | || | |||||||| |||||||||| ||||| ||||| ||||| ||| Sbjct 185 AAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATG 244 Query 1358 AAACTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGT 1417 ||| || | ||||| | | ||||| |||| | | || |||| ||| | ||||| Sbjct 245 AAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGT 304 Query 1418 TACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTCAAATCG 1477 ||||||| ||| ||||||||| | || |||||||||||||| || | |||| | | || | Sbjct 305 TACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTG 364 Query 1478 AGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACGAATCTG 1537 ||||||| ||| |||| ||||||||||||| |||||||||||||||||| |||||| Sbjct 365 AGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTG 424 Query 1538 CTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTTTTATC 1597 || ||||| |||||| || || || || || | |||||||| |||||||||||| Sbjct 425 CTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATC 484 Query 1598 GCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACTACGTT 1657 ||||| ||||| ||| |||||| | |||||||||||||||| | ||||| || || Sbjct 485 GCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT 544 Query 1658 GCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGA 1717 | | ||||||||| || |||| ||||||||||||||||||||||||||||| ||| Sbjct 545 GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGA 604 Query 1718 AAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTC 1777 ||||||| |||||| | || ||| | |||||| ||||||||||| ||||||| Sbjct 605 AAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTC 664 Query 1778 GCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAAATACTTAAAT 1836 ||||||| || |||| | ||| ||||||||||||| | || |||||||| | | ||| Sbjct 665 GCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAAT 723 Query 1837 ATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAA 1896 ||| | || | || ||||||||||||| | || || |||||| || ||||||| | Sbjct 724 ATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGA 783 Query 1897 CAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGACACA 1956 | || | ||||||| | ||||| ||||| || |||| || ||| Sbjct 784 GATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTG--TTC 841 Query 1957 AACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCA 2010 |||||| | ||| || ||||| | | |||| || ||| | ||| || || Sbjct 842 AACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAACAATCCGTACGTTTCCA 898 Query 2011 AACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGA 2070 || ||| | || ||||| || || ||||| || ||| | ||| | || || || || || Sbjct 899 GACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGA 958 Query 2071 CGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCG 2130 ||||| || || | || | || || ||||||||||| ||||| || || ||||| Sbjct 959 TGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCG 1018 Query 2131 CCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTC 2189 || ||| | ||||||||||| ||||| || ||||||||||| || || |||||||||| Sbjct 1019 TCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTC 1077 Query 2190 CTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACATCC 2249 |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| | Sbjct 1078 CTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 1137 Query 2250 AAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTG 2309 |||| |||||||||||||||||||| ||||| ||||| |||||||| | ||||| || | Sbjct 1138 AAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCG 1197 Query 2310 AACGCCCCGTTAAAGCC 2326 | || || ||||||||| Sbjct 1198 AGCGTCCGGTTAAAGCC 1214 >seq592 Length=555 Score = 89.7 bits (98), Expect = 2e-14 Identities = 167/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 3425 TTCTATGTTCCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT 3484 |||| ||||||||||||| || || | ||||| ||| || ||| |||||||||||| Sbjct 553 TTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACT 494 Query 3485 --CATGAAATGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGATATTG 3542 | ||| || || || || ||| | ||||| || |||||||||||||||| Sbjct 493 GCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTG 436 Query 3543 CTTGTGACCCTGCACTG-ATGGCTAACCTGCCACCTCGTGAAGTATCCTTAAAAGAATTC 3601 || | ||||||| || ||||| ||| |||| || |||||| | || | || || | Sbjct 435 CTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTT 377 Query 3602 TTCC--ACTCCTCACCCGATTCTGCTAAATTCAAAATCGCTGAGGGCCAATGGTATCGT 3658 |||| || | | || ||| || || || || |||||||| || ||||||||| Sbjct 376 TTCCGTTCTGGTGATTCG--TCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17733693367290