Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq3217 872 0.0 >seq3217 Length=1214 Score = 872 bits (966), Expect = 0.0 Identities = 927/1217 (76%), Gaps = 23/1217 (2%) Strand=Plus/Plus Query 1118 CAAGACGCATTTTCGCGCGCTGGCTGGCTCTGGCCCGTTGATACAAAGGGCGAACCTCTT 1177 || ||||| ||||| || |||| ||| | ||||| |||||| | || || || || ||| Sbjct 5 CAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTT 64 Query 1178 AAAGCTACCTCGTATATGGCTGTCGGCTTCTACGTCGCTAAATACGTTAACAAAAAATCA 1237 ||||||||| ||||||||||| || ||||| || |||||||||||||||||||| ||| Sbjct 65 AAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCA 124 Query 1238 GATATTGACATGGCCTCTAAAGGTCTAGGGAATAAAGAATGGAACAATTCACTCAAAACC 1297 ||||| ||| | || ||||||||||||| ||||||||||||||| ||||| |||||| Sbjct 125 GATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACC 184 Query 1298 AAAATCAACCTGCTGCCCAAGAAAATTTTTCGCATCAGGATGTCTCGCAACTTCGGAATG 1357 || | || || |||||||| | || | ||||| ||| ||||||||||| ||| Sbjct 185 AAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATG 244 Query 1358 AAGCTGCACACAATGAGTCACCTCTCAGCGGAAACTCTAATCCAACTGACCCAAGTGGGC 1417 || ||| |||||||| | || || |||| |||||||||| ||| | |||| Sbjct 245 AAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGT 304 Query 1418 TACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTG 1477 ||||||| ||| ||||||||| | || |||||||||||||| || | |||| | ||||| Sbjct 305 TACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTG 364 Query 1478 AGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTG 1537 ||||||| ||| |||| ||||||||||||| |||||||||||||||||| |||||| Sbjct 365 AGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTG 424 Query 1538 CTAAAATTCATGCGCAATTTGACCCGTCAA----ATCGGAGTGTCCAACCTGCAGAGTTT 1593 || ||||| |||||| || || | || || || || ||||||||||||||||| Sbjct 425 CTCAAATTTATGCGCGCTTCGA----TAAAAATGATTGGCGTATCCAACCTGCAGAGTTT 480 Query 1594 TATCGCTTCAATGACAACGAAATTAACAAGTATGGATATTTCTGATGAAACCAAAAACTA 1653 ||||||||| ||||| ||| |||||| | ||||||||||||||| | ||||| || Sbjct 481 TATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTA 540 Query 1654 CGTTGATACTGCAGGAATTACTGCTACTCACTTACGAATTAAATCGAAGTGGACTGCTGG 1713 |||||| |||||||||||| || || ||||||||||||||||||||||||||||| Sbjct 541 TCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGG 600 Query 1714 TGGAAAATGAAGAAATTCAATCTGAACTTAAAAAATTCGAGAAGCTCTTACTTCGCCACC 1773 ||||||||| |||||| | || ||| | ||||||||||||||||| || ||| Sbjct 601 CGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACC 660 Query 1774 TTTCGCCATCACCTGAACG-TACTGGCAAAGACTGACGCTCTCGACGAGGAAAAATACCT 1832 ||||||||||| || |||| | ||| |||| |||||||| | || ||||| || | || Sbjct 661 TTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCT 719 Query 1833 AAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGAACATTTCGTACATGG 1892 |||||||| || | || ||||||||||||| | || || |||||| || ||||| Sbjct 720 TAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGG 779 Query 1893 TAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTATTATC-----CACA---TCA 1944 || | | || | ||||| | ||||| || |||||| || |||| | | | Sbjct 780 TAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGT 839 Query 1945 ACAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAACGAATCTGCTGTTGCCTTCG 2001 |||||| | || ||| || | | |||| | || ||| | || ||| Sbjct 840 TCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCC 897 Query 2002 CTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAG 2061 || ||| | || ||||| ||||||||||||||||| | || |||| | ||||||| Sbjct 898 AGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAG 957 Query 2062 ACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTC 2121 | || |||||||| | || || || || |||||||| ||||||||||| ||||||| Sbjct 958 ATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTC 1017 Query 2122 GCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTC 2181 | ||| ||||||| ||||| |||||||| |||||||||| |||||||||||||||| Sbjct 1018 GTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTC 1077 Query 2182 CTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCC 2241 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1078 CTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTC 1137 Query 2242 AGACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTG 2301 | || || ||||| || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 1138 AAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCG 1197 Query 2302 ACCAGCCAGTTAAGGCC 2318 | | || ||||| ||| Sbjct 1198 AGCGTCCGGTTAAAGCC 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442504970245