Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq3217 401 2e-108 seq592 154 6e-34 >seq3217 Length=1214 Score = 401 bits (444), Expect = 2e-108 Identities = 263/290 (91%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 925 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 984 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 985 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1044 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1104 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1105 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1164 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCC 2870 |||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1165 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCC 1214 >seq592 Length=555 Score = 154 bits (170), Expect = 6e-34 Identities = 314/457 (69%), Gaps = 12/457 (3%) Strand=Plus/Minus Query 3923 CCTGAGCATGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACTC--ATGAAA 3980 |||||||||||||||||||| || || || | || || || ||||| ||| | ||| Sbjct 544 CCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA 485 Query 3981 TGGAGATGCATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACC 4040 ||||| || ||| | | ||||| | |||||||||||| ||| | ||| | |||| Sbjct 484 --GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACC 427 Query 4041 CTGCTTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCT 4099 ||| |||| ||||| |||||||| || ||||| || |||| | | |||| |||| Sbjct 426 CTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCT 368 Query 4100 GGAAGTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGA 4158 || | | | ||||||||||| ||||| |||||||||||||| |||| |||| Sbjct 367 GGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT-- 311 Query 4159 TCG--CGTTGCATTGCCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCG 4216 ||| ||| | | ||| || |||||| || || || ||| | | || Sbjct 310 TCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCT 251 Query 4217 TCTGATGATATTAAGCAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAG 4276 |||| |||| | | | ||||| || || || | || || || ||||||| Sbjct 250 TCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAG 191 Query 4277 TCTATGCAGCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAAT 4336 || | ||| | ||| ||||||| ||| ||| |||||| ||| ||||||| ||| Sbjct 190 TCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAAT 131 Query 4337 ATGCCGACCACTCGCGACTCTATTATGACCTCTTGAT 4373 |||||||||||||||| || || ||||| || |||| Sbjct 130 CTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19301608915264