Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq3217 893 0.0 seq592 141 3e-30 >seq3217 Length=1214 Score = 893 bits (990), Expect = 0.0 Identities = 930/1214 (77%), Gaps = 12/1214 (1%) Strand=Plus/Plus Query 1124 CAGGATGCTTTCTCTCGCGCTGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACCCCTT 1183 ||||| ||||| || || |||| ||| | |||||||| ||| | || ||||| || ||| Sbjct 5 CAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTT 64 Query 1184 AAATCCACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAATAAAAAATCT 1243 ||| | ||| ||||||||||| || ||||| || |||||||||||||| ||||| || Sbjct 65 AAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCA 124 Query 1244 GATGTTGACATAGCCGCAAAAGGCTTAGGGAATCAAAAATGGAACGCTACATTAAAAACG 1303 ||| | ||| | || || ||||| |||| | || |||||||| || ||||||| Sbjct 125 GATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACC 184 Query 1304 CAGATGGCTCTTTTACCAAAGAAACTATTTCGAATTCGAATGAGCCGCAACTTCGGGATG 1363 || || | || | || ||||| || || |||| ||||||||||||||||||||||| Sbjct 185 AAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATG 244 Query 1364 AAACTACTCCCAATGACGACGCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGTGGGT 1423 ||| | ||| ||||||| | ||| || ||||||| ||||||||||| ||| | ||||| Sbjct 245 AAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGT 304 Query 1424 TACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTG 1483 ||||||| ||| ||||||||| | || |||||||||||||| || | |||| | ||||| Sbjct 305 TACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTG 364 Query 1484 AGGCTGGCAAAGCAATCTGTAGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTG 1543 ||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||| Sbjct 365 AGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTG 424 Query 1544 CTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTTTATC 1603 || ||||| |||||| || || || || || | |||| ||| |||||||||||| Sbjct 425 CTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATC 484 Query 1604 GCTTCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTACGTT 1663 ||||| ||||||||||| ||| || | |||||||||||||||| | ||||| || || Sbjct 485 GCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT 544 Query 1664 ACTAATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGA 1723 ||| ||||||||| || |||| |||||| |||||||||||||||||||||| ||| Sbjct 545 GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGA 604 Query 1724 AAATGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTC 1783 |||||| || ||| | || ||| | |||||| |||||||| || ||||||| Sbjct 605 AAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTC 664 Query 1784 GCCATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAAT 1842 ||||||| || |||| | | |||| ||||||||| | ||||| || || ||||| ||| Sbjct 665 GCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAAT 723 Query 1843 ATGATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAA 1902 ||| | ||| | | | ||||||||||| | ||||| |||||| || ||||| | | Sbjct 724 ATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGA 783 Query 1903 GAATCAATGCTTGACATTCTAAATGAACGTGGCCTATTATCCACCTTGCCAAATG--GCT 1960 || || | |||||||| |||| || ||||| || ||| | | | ||| | | Sbjct 784 GATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTAT---CTGAGTCCGATGCTGTT 840 Query 1961 TAAC--TTACAAAGGAATCAAAAATGA---AAGCAAATGAGAACGCAGTAGCCTTTCAAA 2015 ||| || | | || || |||| ||| | ||| | | ||| || || | Sbjct 841 CAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGA 900 Query 2016 CCGCTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAGGACG 2075 ||||| | ||||| || || || |||||||| ||| | ||| | || | || || || | Sbjct 901 CCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATG 960 Query 2076 ATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGTGCTCGCC 2135 ||||||| || | || || || || |||||||| ||||||||||| |||||||| | Sbjct 961 ATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTC 1020 Query 2136 GCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGCTTTCCTG 2195 || ||||||||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 1021 GCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTG 1080 Query 2196 CTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATTCAAA 2255 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1081 CTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAA 1140 Query 2256 CGGCATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTCGATG 2315 |||| ||||| || ||||||||||||||||| || |||||||| |||||||| ||||| Sbjct 1141 CGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGC 1200 Query 2316 CCCCGGTTAAAGCC 2329 |||||||||||| Sbjct 1201 GTCCGGTTAAAGCC 1214 >seq592 Length=555 Score = 141 bits (156), Expect = 3e-30 Identities = 367/552 (66%), Gaps = 33/552 (6%) Strand=Plus/Minus Query 3381 TTCTATGTTCCTGAGCATGGCGTAATTATGACTTTATCTGTTACTCGCTTCCCTCCTACT 3440 |||| |||||||||||||||| || | ||| | | || ||| || || |||||| Sbjct 553 TTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACT 494 Query 3441 C--ACGAAATGGAAATGCACTATCTCGTCGGTAAGGAATCTCTGACTTATACTGACATTG 3498 || ||| || || || || || || ||| | || |||||||||| || |||| Sbjct 493 GCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTG 436 Query 3499 CCTGTGACCCTGCTCT-TATGGCTAACCTGCCTCCGCGTGAAATTGAGGTAAAAGACCTC 3557 | | ||||||| | | |||||| ||| |||| |||||||||||| | || || | Sbjct 435 CTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTT 377 Query 3558 TTTCACTCTGCTGGT---ACTGGTAAATTCAAAATTGCCGAAGGTCAATGGTATCGTACT 3614 || | |||| || | || || || || ||||| || ||||| ||||||||| | Sbjct 376 TTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTAT 317 Query 3615 CAGCCTGACCGCGTTGCCTTCC--CTTATAACGCTCTTGACGGCTTCCCTTTCTATTC-T 3671 |||| ||| | ||| ||||| || |||||| |||||||| ||| |||| Sbjct 316 GCGCCTTCGTATGTTTC--TCCTGCTTATCACCTTCTTGAAGGCTTCCCATTC-ATTCAG 260 Query 3672 GAACTGCCGTCTAATGATATTCTCGAACGTGTACTTGTTCGAACTGATAACTATGATGAA 3731 |||| ||| ||| |||| | | ||||| |||||| |||| || | ||||| | Sbjct 259 GAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAG 200 Query 3732 ATCTTCCAGTCTATGCAACTTGCACACTGGAACATGCAAACTAAATTTAACACTACTGTA 3791 |||||||| | || | || ||||| | || ||||||||| || || Sbjct 199 TGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTT 140 Query 3792 TATCGTCATATGCCTACCACTCGTGATGGCATCATGA---CGTCATAAAA---------- 3838 ||||| || |||| |||||||| ||| ||||||| ||| |||||| Sbjct 139 TATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGT 80 Query 3839 -----CAAAACGTTGAACGGGTACAAATTTTAATTTGTGCCTGTTCAAGGTTGAACAAGC 3893 | |||| ||| |||| |||||||||||| |||| | |||||| ||||| Sbjct 79 GAGGTTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGC 20 Query 3894 GAAGCGCGTTAG 3905 |||||||| ||| Sbjct 19 GAAGCGCGGTAG 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442504970245