Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= NC_012868.1
Length=6094
Score E
Sequences producing significant alignments: (Bits) Value
seq3217 329 1e-86
seq592 116 1e-22
>seq3217
Length=1214
Score = 329 bits (364), Expect = 1e-86
Identities = 247/290 (85%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616
|||||||| || ||| ||||| | || || || |||||||| || ||||| || | |
Sbjct 925 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 984
Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676
| |||||||||| || |||||| ||||| |||||||| || |||||||| |||||||
Sbjct 985 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1044
Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736
| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1045 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1104
Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796
|||||||||||||||||||||||||||||||||| || || || ||| | ||||||||||
Sbjct 1105 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1164
Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCC 2846
| || |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1165 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCC 1214
>seq592
Length=555
Score = 116 bits (128), Expect = 1e-22
Identities = 253/375 (67%), Gaps = 14/375 (4%)
Strand=Plus/Minus
Query 3989 TTTGACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGA 4048
||||||||||||||| |||| || ||||| | |||| ||| || |||||||| |||||
Sbjct 455 TTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA 396
Query 4049 GATTTCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGA 4108
|||||| ||||| |||||||| |||| | || | ||| ||||| |||| ||
Sbjct 395 AATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGA 336
Query 4109 GTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAG 4167
| | ||||||||| | || |||||| || | ||||| | |||||||
Sbjct 335 GGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAG 277
Query 4168 GTTTTCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTA 4227
| || || ||| || | || ||| || ||||||| | |||| ||
Sbjct 276 GCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-G 229
Query 4228 TTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGA 4287
| || ||| ||| |||| ||| | ||||||||||| |||||| | |||||||
Sbjct 228 TACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA 169
Query 4288 ATAATCAGGCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTA 4347
||| ||||| | | |||||| | |||||||| || | || || ||| ||||| |
Sbjct 168 ATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAA 109
Query 4348 TTATGACCTCTTGAT 4362
| ||||| || ||||
Sbjct 108 TCATGACTTCGTGAT 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19384805505416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |