Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq3217 329 1e-86 seq592 116 1e-22 >seq3217 Length=1214 Score = 329 bits (364), Expect = 1e-86 Identities = 247/290 (85%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 925 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 984 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 985 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1044 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 1045 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1104 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 1105 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1164 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCC 2846 | || |||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1165 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCC 1214 >seq592 Length=555 Score = 116 bits (128), Expect = 1e-22 Identities = 253/375 (67%), Gaps = 14/375 (4%) Strand=Plus/Minus Query 3989 TTTGACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGA 4048 ||||||||||||||| |||| || ||||| | |||| ||| || |||||||| ||||| Sbjct 455 TTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA 396 Query 4049 GATTTCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGA 4108 |||||| ||||| |||||||| |||| | || | ||| ||||| |||| || Sbjct 395 AATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGA 336 Query 4109 GTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAG 4167 | | ||||||||| | || |||||| || | ||||| | ||||||| Sbjct 335 GGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAG 277 Query 4168 GTTTTCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTA 4227 | || || ||| || | || ||| || ||||||| | |||| || Sbjct 276 GCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-G 229 Query 4228 TTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGA 4287 | || ||| ||| |||| ||| | ||||||||||| |||||| | ||||||| Sbjct 228 TACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA 169 Query 4288 ATAATCAGGCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTA 4347 ||| ||||| | | |||||| | |||||||| || | || || ||| ||||| | Sbjct 168 ATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAA 109 Query 4348 TTATGACCTCTTGAT 4362 | ||||| || |||| Sbjct 108 TCATGACTTCGTGAT 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384805505416