Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014927.1 Length=1838 Score E Sequences producing significant alignments: (Bits) Value seq35 122 1e-24 >seq35 Length=251576 Score = 122 bits (134), Expect = 1e-24 Identities = 177/247 (72%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 636 GAGATTTTAAAACAGAAGTGTACTTCTTCTGGGGACCAACTGGAGCAGGAAAATCCAGAA 695 ||||||| |||||| ||| ||| |||| |||||| |||| | || ||||| |||| Sbjct 193668 GAGATTTCAAAACATTGGTGCACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGAA 193727 Query 696 CTGCACGCGAACAAGCGCTCGCGACTGGATTACGGGTATACTACAAACCTAGAGGAGACT 755 | ||| | || | || | | ||||| || | ||||||||||||| | | | | | Sbjct 193728 CAGCATACCAAAATGCATTAGAAACTGGCGAACCGATATACTACAAACCACGGGCAAA-T 193786 Query 756 GGTGGGATGGATACAACGGACAT--GAATGCGTCATCTTCGATGACTTCTACGGATGGAT 813 |||||||||||||| | ||| |||| |||| | |||||||||||||||||||| Sbjct 193787 GGTGGGATGGATACGAACAACAACCGAATA--TCATAATAGATGACTTCTACGGATGGAT 193844 Query 814 AAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTATCGCGTACCAGTCAAAGG 873 |||||| || | | || || ||||| ||||| || || |||||| ||||||| Sbjct 193845 CCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGG 193904 Query 874 TGGATAC 880 |||||| Sbjct 193905 AGGATAC 193911 Score = 122 bits (134), Expect = 1e-24 Identities = 177/247 (72%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 636 GAGATTTTAAAACAGAAGTGTACTTCTTCTGGGGACCAACTGGAGCAGGAAAATCCAGAA 695 ||||||| |||||| ||| ||| |||| |||||| |||| | || ||||| |||| Sbjct 198402 GAGATTTCAAAACATTGGTGCACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGAA 198343 Query 696 CTGCACGCGAACAAGCGCTCGCGACTGGATTACGGGTATACTACAAACCTAGAGGAGACT 755 | ||| | || | || | | ||||| || | ||||||||||||| | | | | | Sbjct 198342 CAGCATACCAAAATGCATTAGAAACTGGCGAACCGATATACTACAAACCACGGGCAAA-T 198284 Query 756 GGTGGGATGGATACAACGGACAT--GAATGCGTCATCTTCGATGACTTCTACGGATGGAT 813 |||||||||||||| | ||| |||| |||| | |||||||||||||||||||| Sbjct 198283 GGTGGGATGGATACGAACAACAACCGAATA--TCATAATAGATGACTTCTACGGATGGAT 198226 Query 814 AAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTATCGCGTACCAGTCAAAGG 873 |||||| || | | || || ||||| ||||| || || |||||| ||||||| Sbjct 198225 CCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGG 198166 Query 874 TGGATAC 880 |||||| Sbjct 198165 AGGATAC 198159 Score = 77.0 bits (84), Expect = 4e-11 Identities = 132/189 (70%), Gaps = 11/189 (6%) Strand=Plus/Minus Query 734 TACTACAAACCTAGAGGAGACTGGTGGGATGGAT----ACAACGGACATGAATGCGTCAT 789 |||||||||||| |||| | ||||||||||| | ||||| | | ||| | || Sbjct 196641 TACTACAAACCTCGAGGCAAATGGTGGGATGGCTATGAACAACAGCC--TAAT--ATTAT 196586 Query 790 CTTCGATGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCGTTA 849 | || ||||||||||| |||||| ||||||||| || || || ||| | || Sbjct 196585 TATTGACGACTTCTACGGTTGGATACCATACGACGA---CCTAAAAATCCTCGACAGATA 196529 Query 850 TCCTTATCGCGTACCAGTCAAAGGTGGATACGAGAATTTTATTGCGaaaaaaaTATGGTT 909 ||||||| | || ||| | ||||||||||| | | ||| | |||| ||||||| | Sbjct 196528 TCCTTATAGGGTGCCAATAAAAGGTGGATATCAAATTTTCAACTCGAAGCGAATATGGAT 196469 Query 910 TACGTCAAA 918 || || || Sbjct 196468 AACATCCAA 196460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5772576552952