Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014928.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value seq35 129 6e-27 >seq35 Length=251576 Score = 129 bits (142), Expect = 6e-27 Identities = 182/251 (73%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 466 GATTTCAAGACTGAGGTTTTTTATTACTGGGGGCCGCCAGGATCTGGGAAATCTAGAAGA 525 |||| |||||| | || ||||| || || || |||||| | || ||||| | || Sbjct 196737 GATTACAAGACGCAAGTGTTTTACTATCACGGTCCTCCAGGAACAGGAAAATCAAAAACT 196678 Query 526 GCGCTTGAGGAAGCGAGGC--AACTTGACGGAGAATCCATATACTACAAACCCCGAGGAT 583 || || | || |||||| || | ||||| |||| ||||||||||| ||||| Sbjct 196677 GC-CT--ACGA--CGAGGCCAAAGCTACAGGAGAGGCCATTTACTACAAACCTCGAGGCA 196623 Query 584 TATGGTGGGATGGCTATGAACAACAGCGCAGCGTTATAATAGACGACTTCTATGGATGGA 643 |||||||||||||||||||||||||| | |||| || ||||||||||| || |||| Sbjct 196622 AATGGTGGGATGGCTATGAACAACAGCCTAATATTATTATTGACGACTTCTACGGTTGGA 196563 Query 644 TAAAGTACGACGAAATGCTGAAAATAATGGACCGCTACCCATACAAGGTACAAATAAAAG 703 || |||||||| || ||||| | ||| | || || || | ||| | |||||||| Sbjct 196562 TACCATACGACGA---CCTAAAAATCCTCGACAGATATCCTTATAGGGTGCCAATAAAAG 196506 Query 704 GAGGATTTCAA 714 | |||| |||| Sbjct 196505 GTGGATATCAA 196495 Score = 113 bits (124), Expect = 5e-22 Identities = 127/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 553 GGAGAATCCATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGC 612 || ||| | |||||||||||||| || | | |||||||||||| || |||||||| | Sbjct 193754 GGCGAACCGATATACTACAAACCACGGGCAA-ATGGTGGGATGGATACGAACAACAACCG 193812 Query 613 AGCGTTATAATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATG 672 | | |||||||| |||||||| |||||||| ||||| || || | ||||| | Sbjct 193813 AATATCATAATAGATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTA 193872 Query 673 GACCGCTACCCATACAAGGTACAAATAAAAGGAGGATTTCAAGAATTCA 721 || || || |||||| |||| ||| |||||||||| |||| ||||| Sbjct 193873 GATCGATATCCATACCGAGTACCAATCAAAGGAGGATACCAAGTATTCA 193921 Score = 113 bits (124), Expect = 5e-22 Identities = 127/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 553 GGAGAATCCATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGC 612 || ||| | |||||||||||||| || | | |||||||||||| || |||||||| | Sbjct 198316 GGCGAACCGATATACTACAAACCACGGGCAA-ATGGTGGGATGGATACGAACAACAACCG 198258 Query 613 AGCGTTATAATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATG 672 | | |||||||| |||||||| |||||||| ||||| || || | ||||| | Sbjct 198257 AATATCATAATAGATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTA 198198 Query 673 GACCGCTACCCATACAAGGTACAAATAAAAGGAGGATTTCAAGAATTCA 721 || || || |||||| |||| ||| |||||||||| |||| ||||| Sbjct 198197 GATCGATATCCATACCGAGTACCAATCAAAGGAGGATACCAAGTATTCA 198149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5494187328946