Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014929.1 Length=1703 Score E Sequences producing significant alignments: (Bits) Value seq35 111 2e-21 >seq35 Length=251576 Score = 111 bits (122), Expect = 2e-21 Identities = 187/267 (70%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 472 AAAACATGGGTCTACTACTACTGGGGACCACCAGGCACGGGAAAATCACGACGAGCTCTG 531 ||||||| ||| |||| | || |||||||| |||||||| |||||| || ||| Sbjct 193676 AAAACATTGGTGCACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGAACAGCATAC 193735 Query 532 GAAGAAGCATCCCAAATCAACAGCAATAGTATATACTACAAACCACGTGGACTCTGGTGG 591 || | |||| ||| | || | ||||||||||||||||| | | |||||| Sbjct 193736 CAAAATGCATTAGAAACTGGCG--AACCG-ATATACTACAAACCACGGGCAAA-TGGTGG 193791 Query 592 GACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATAAAGTAC 651 || || || | |||||| ||| |||| ||||| || |||||||||||||| ||| Sbjct 193792 GATGGATACGAACAACAACCGAATATCATAATAGATGACTTCTACGGATGGATCCCATAC 193851 Query 652 GACGAACTCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAAAGGAGGATTT 711 || || | | ||||| || || || ||||| ||||| |||||||||||||| Sbjct 193852 GATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGGAGGATAC 193911 Query 712 GAGGAGTTCACATCAAAACGCATTTGG 738 | | |||| || |||||||| ||| Sbjct 193912 CAAGTATTCAATTCTAAACGCATCTGG 193938 Score = 111 bits (122), Expect = 2e-21 Identities = 187/267 (70%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 472 AAAACATGGGTCTACTACTACTGGGGACCACCAGGCACGGGAAAATCACGACGAGCTCTG 531 ||||||| ||| |||| | || |||||||| |||||||| |||||| || ||| Sbjct 198394 AAAACATTGGTGCACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGAACAGCATAC 198335 Query 532 GAAGAAGCATCCCAAATCAACAGCAATAGTATATACTACAAACCACGTGGACTCTGGTGG 591 || | |||| ||| | || | ||||||||||||||||| | | |||||| Sbjct 198334 CAAAATGCATTAGAAACTGGCG--AACCG-ATATACTACAAACCACGGGCAAA-TGGTGG 198279 Query 592 GACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATAAAGTAC 651 || || || | |||||| ||| |||| ||||| || |||||||||||||| ||| Sbjct 198278 GATGGATACGAACAACAACCGAATATCATAATAGATGACTTCTACGGATGGATCCCATAC 198219 Query 652 GACGAACTCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAAAGGAGGATTT 711 || || | | ||||| || || || ||||| ||||| |||||||||||||| Sbjct 198218 GATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGGAGGATAC 198159 Query 712 GAGGAGTTCACATCAAAACGCATTTGG 738 | | |||| || |||||||| ||| Sbjct 198158 CAAGTATTCAATTCTAAACGCATCTGG 198132 Score = 77.0 bits (84), Expect = 3e-11 Identities = 106/148 (72%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 562 ATATACTACAAACCACGTGGACTCTGGTGGGACGGTTATCATCAACAAGAAAATGTCATC 621 || ||||||||||| || || |||||||| || ||| | ||||| ||| | || Sbjct 196644 ATTTACTACAAACCTCGAGGCAAATGGTGGGATGGCTATGAACAACAGCCTAATATTATT 196585 Query 622 ATAGACGATTTCTACGGATGGATAAAGTACGACGAACTCCTCAAAATAACTGACCGCTAC 681 || ||||| |||||||| |||||| |||||||| ||| ||||| ||| | || Sbjct 196584 ATTGACGACTTCTACGGTTGGATACCATACGACGA---CCTAAAAATCCTCGACAGATAT 196528 Query 682 CCATATAAAGTACAAATCAAAGGAGGAT 709 || |||| || | ||| ||||| |||| Sbjct 196527 CCTTATAGGGTGCCAATAAAAGGTGGAT 196500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5340593274322