Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014930.1 Length=1760 Score E Sequences producing significant alignments: (Bits) Value seq35 127 2e-26 >seq35 Length=251576 Score = 127 bits (140), Expect = 2e-26 Identities = 170/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 475 ACACAAGTATATTACTACTACGGTCCGCCAGGAACAGGTAAATCCAGAACTGCTTTGGAA 534 || ||||| | |||||| ||||||| ||||||||||| ||||| | |||||| | || Sbjct 196728 ACGCAAGTGTTTTACTATCACGGTCCTCCAGGAACAGGAAAATCAAAAACTGCCTACGAC 196669 Query 535 GAAGCaaaaaaaaTTGATCCGACTTCCATCTACTATAAACCACGAGGTCTGTGGGGGGAC 594 || || ||| | | | | ||| ||||| ||||| ||||| ||| |||| Sbjct 196668 GAGGCCAAAGCTACAGGAGAGGC---CATTTACTACAAACCTCGAGGCAAATGGTGGGAT 196612 Query 595 GGCTATACAAACCAGAAATGTGTTATTATTGACGACTTCTACGGATGGATAAAATACGAC 654 |||||| | | ||| | |||||||||||||||||||||| |||||| ||||||| Sbjct 196611 GGCTATGAACAACAGCCTAATATTATTATTGACGACTTCTACGGTTGGATACCATACGAC 196552 Query 655 GAACTACTGAAAATTTGCGACCGTTATCCTTACAAAGTACAAATAAAAGGGGGAT 709 || ||| ||||| |||| | |||||||| | || | ||||||||| |||| Sbjct 196551 GACCTA---AAAATCCTCGACAGATATCCTTATAGGGTGCCAATAAAAGGTGGAT 196500 Score = 89.7 bits (98), Expect = 6e-15 Identities = 179/260 (69%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 492 CTACGGTCCGCCAGGAACAGGTAAATCCAGAACTGCTTTGGAAGAAGCaaaaaaaaTTGA 551 ||| || || || || || || ||||| ||||| || | || | ||| | ||| || Sbjct 193696 CTATGGACCACCTGGCACGGGCAAATCAAGAACAGCATACCAAAATGCATTAGAAACTGG 193755 Query 552 TCCGACTTCCATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATACAAACCAGAA 611 ||| | || ||||| |||||||| || ||| |||| || |||| ||| | || Sbjct 193756 --CGAAC-CGATATACTACAAACCACG-GGCAAATGGTGGGATGG--ATACGAACAACAA 193809 Query 612 ATG--TGTTATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATT 669 | | | || || || ||||||||||||||||| |||||| || | | ||||| Sbjct 193810 CCGAATATCATAATAGATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATC 193869 Query 670 TGCGACCGTTATCCTTACAAAGTACAAATAAAAGGGGGATTCGAAGAATTCAACAGCACA 729 || || ||||| ||| ||||| ||| ||||| |||| | ||| |||||| | | Sbjct 193870 CTAGATCGATATCCATACCGAGTACCAATCAAAGGAGGATACCAAGTATTCAATTCTAAA 193929 Query 730 CACATCTGGATTACTTCAAA 749 | ||||||||| ||||| || Sbjct 193930 CGCATCTGGATAACTTCCAA 193949 Score = 89.7 bits (98), Expect = 6e-15 Identities = 179/260 (69%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 492 CTACGGTCCGCCAGGAACAGGTAAATCCAGAACTGCTTTGGAAGAAGCaaaaaaaaTTGA 551 ||| || || || || || || ||||| ||||| || | || | ||| | ||| || Sbjct 198374 CTATGGACCACCTGGCACGGGCAAATCAAGAACAGCATACCAAAATGCATTAGAAACTGG 198315 Query 552 TCCGACTTCCATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATACAAACCAGAA 611 ||| | || ||||| |||||||| || ||| |||| || |||| ||| | || Sbjct 198314 --CGAAC-CGATATACTACAAACCACG-GGCAAATGGTGGGATGG--ATACGAACAACAA 198261 Query 612 ATG--TGTTATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATT 669 | | | || || || ||||||||||||||||| |||||| || | | ||||| Sbjct 198260 CCGAATATCATAATAGATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATC 198201 Query 670 TGCGACCGTTATCCTTACAAAGTACAAATAAAAGGGGGATTCGAAGAATTCAACAGCACA 729 || || ||||| ||| ||||| ||| ||||| |||| | ||| |||||| | | Sbjct 198200 CTAGATCGATATCCATACCGAGTACCAATCAAAGGAGGATACCAAGTATTCAATTCTAAA 198141 Query 730 CACATCTGGATTACTTCAAA 749 | ||||||||| ||||| || Sbjct 198140 CGCATCTGGATAACTTCCAA 198121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5522986214188