Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_015399.1 Length=1957 Score E Sequences producing significant alignments: (Bits) Value seq35 82.4 9e-13 >seq35 Length=251576 Score = 82.4 bits (90), Expect = 9e-13 Identities = 104/142 (73%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 663 TACTATAAGCCTCGCGGTATGTGGTGGGATGGATACGATGGACAAGAGAATGTAATTGTC 722 ||||| || || || || | ||||||||||||||||| |||| |||| | || | Sbjct 193766 TACTACAAACCACG-GGCAAATGGTGGGATGGATACGAACAACAACCGAATATCATAATA 193824 Query 723 GATGACTTTTACGGCTGGATGCCATGTGATGAACTGTTGAGAGTGTTTGATCGATATCCT 782 |||||||| ||||| ||||| |||| ||||| |||| | | | | ||||||||||| Sbjct 193825 GATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCA 193884 Query 783 TGTAAAGTACCGGTAAAAGGAG 804 | |||||| | ||||||| Sbjct 193885 TACCGAGTACCAATCAAAGGAG 193906 Score = 82.4 bits (90), Expect = 9e-13 Identities = 104/142 (73%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 663 TACTATAAGCCTCGCGGTATGTGGTGGGATGGATACGATGGACAAGAGAATGTAATTGTC 722 ||||| || || || || | ||||||||||||||||| |||| |||| | || | Sbjct 198304 TACTACAAACCACG-GGCAAATGGTGGGATGGATACGAACAACAACCGAATATCATAATA 198246 Query 723 GATGACTTTTACGGCTGGATGCCATGTGATGAACTGTTGAGAGTGTTTGATCGATATCCT 782 |||||||| ||||| ||||| |||| ||||| |||| | | | | ||||||||||| Sbjct 198245 GATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCA 198186 Query 783 TGTAAAGTACCGGTAAAAGGAG 804 | |||||| | ||||||| Sbjct 198185 TACCGAGTACCAATCAAAGGAG 198164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6153361813374