Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_020206.1 Length=1719 Score E Sequences producing significant alignments: (Bits) Value seq35 120 3e-24 >seq35 Length=251576 Score = 120 bits (132), Expect = 3e-24 Identities = 122/158 (77%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 986 AATTCCTCGTATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGT 1045 ||| | | |||||| ||||| | ||||||| |||||| ||||| || ||||||| Sbjct 193919 AATACTTGGTATCCTCCTTTGATTGGTACTCGGTATGGATATCGATCTAGGATTTTTAAC 193860 Query 1046 AGTTCGTCCCATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGG 1105 | || || || ||||||||||||||||| |||||||||| || |||||| | | Sbjct 193859 AAGTCATCGTATGGGATCCATCCGTAGAAGTCATCTATTATGATATTCGGTTGTTGTTCG 193800 Query 1106 TATCCGTCCCACCATTCTCCGCGTGGTTTGTAGTATAT 1143 ||||| |||||||||| | | ||||||||||||||||| Sbjct 193799 TATCCATCCCACCATT-TGCCCGTGGTTTGTAGTATAT 193763 Score = 120 bits (132), Expect = 3e-24 Identities = 122/158 (77%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 986 AATTCCTCGTATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGT 1045 ||| | | |||||| ||||| | ||||||| |||||| ||||| || ||||||| Sbjct 198151 AATACTTGGTATCCTCCTTTGATTGGTACTCGGTATGGATATCGATCTAGGATTTTTAAC 198210 Query 1046 AGTTCGTCCCATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGG 1105 | || || || ||||||||||||||||| |||||||||| || |||||| | | Sbjct 198211 AAGTCATCGTATGGGATCCATCCGTAGAAGTCATCTATTATGATATTCGGTTGTTGTTCG 198270 Query 1106 TATCCGTCCCACCATTCTCCGCGTGGTTTGTAGTATAT 1143 ||||| |||||||||| | | ||||||||||||||||| Sbjct 198271 TATCCATCCCACCATT-TGCCCGTGGTTTGTAGTATAT 198307 Score = 96.9 bits (106), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 961 TGTAATCCATATTCTCCT--ACTTGTAAATTCCTCGTATCCCCCTTTTACTGGTACTTTG 1018 ||| |||||||||| | | | ||| ||||| | ||||| ||||||| ||| || | Sbjct 196465 TGTTATCCATATTCGCTTCGAGTTGAAAATT--TGATATCCACCTTTTATTGGCACCCTA 196522 Query 1019 TATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTTATCCATCCGTAGAAGTCG 1078 || || |||| |||| |||||||| ||||| || |||||| |||||||||||| Sbjct 196523 TAAGGATATCTGTCGAGGATTTTTAGG---TCGTCGTATGGTATCCAACCGTAGAAGTCG 196579 Query 1079 TCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCACCATTCTCCGCGTGGTTTGTAG 1138 || || || | || ||||| | || || |||||||||| || || ||||||||| Sbjct 196580 TCAATAATAATATTAGGCTGTTGTTCATAGCCATCCCACCATTTGCCTCGAGGTTTGTAG 196639 Query 1139 TATAT 1143 || || Sbjct 196640 TAAAT 196644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5391791292530