Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_021568.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value seq35 109 6e-21 >seq35 Length=251576 Score = 109 bits (120), Expect = 6e-21 Identities = 152/211 (72%), Gaps = 9/211 (4%) Strand=Plus/Minus Query 699 CAAAGCTACAGGAGAAGATACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTG 758 ||||||||||||||| | | ||||||||||| |||| ||||||||||||| || Sbjct 196663 CAAAGCTACAGGAGAGGCCATTTACTACAAACCTCGAGGCAAATGGTGGGATGG---CTA 196607 Query 759 TGGACAA---CCTAATGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACT 815 || |||| |||||| | | || |||||||| || || ||||| ||| ||||| Sbjct 196606 TGAACAACAGCCTAATATTATTATTGACGACTTCTACGGTTGGATACCATACGACGA--- 196550 Query 816 TCTCAAAATTTGCGACCGATACCCCTACCGCGTCCCAGTCAAAGGAGGATACGAAAACTT 875 || ||||| |||| |||| || || | || ||| | ||||| ||||| ||| || Sbjct 196549 CCTAAAAATCCTCGACAGATATCCTTATAGGGTGCCAATAAAAGGTGGATATCAAATTTT 196490 Query 876 CTGCAGCAAGCGAATCTGGATAACTTCTAAT 906 | | |||||||| |||||||| || ||| Sbjct 196489 CAACTCGAAGCGAATATGGATAACATCCAAT 196459 Score = 102 bits (112), Expect = 9e-19 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 721 TACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATC 780 |||||||||||| | | | ||||||||||||||||| |||||| ||| | | || Sbjct 193766 TACTACAAACCACGGGCA-AATGGTGGGATGGATACGAACAACAACCGAATATCATAATA 193824 Query 781 GACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCC 840 || ||||| || |||||||| ||| || || | | ||||| || ||||| || Sbjct 193825 GATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCA 193884 Query 841 TACCGCGTCCCAGTCAAAGGAGGATACGAAAACTTCTGCAGCAAGCGAATCTGGATAACT 900 ||||| || ||| |||||||||||||| || ||| || || |||||||||||| Sbjct 193885 TACCGAGTACCAATCAAAGGAGGATACCAAGTATTCAATTCTAAACGCATCTGGATAACT 193944 Query 901 TCTAAT 906 || ||| Sbjct 193945 TCCAAT 193950 Score = 102 bits (112), Expect = 9e-19 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 721 TACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATC 780 |||||||||||| | | | ||||||||||||||||| |||||| ||| | | || Sbjct 198304 TACTACAAACCACGGGCA-AATGGTGGGATGGATACGAACAACAACCGAATATCATAATA 198246 Query 781 GACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCC 840 || ||||| || |||||||| ||| || || | | ||||| || ||||| || Sbjct 198245 GATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCA 198186 Query 841 TACCGCGTCCCAGTCAAAGGAGGATACGAAAACTTCTGCAGCAAGCGAATCTGGATAACT 900 ||||| || ||| |||||||||||||| || ||| || || |||||||||||| Sbjct 198185 TACCGAGTACCAATCAAAGGAGGATACCAAGTATTCAATTCTAAACGCATCTGGATAACT 198126 Query 901 TCTAAT 906 || ||| Sbjct 198125 TCCAAT 198120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5753377296124