Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_021707.2 Length=1855 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 1e-17 >seq35 Length=251576 Score = 98.7 bits (108), Expect = 1e-17 Identities = 130/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 782 TACTACAAGCCGCGTGGAGAATGGTGGGATGGATACACCGGACAACCGTGCGTTGTTATC 841 |||||||| || || | | ||||||||||||||||| ||||||| | | || Sbjct 193766 TACTACAAACCACGGGCA-AATGGTGGGATGGATACGAACAACAACCGAATATCATAATA 193824 Query 842 GATGACTTCTACGGATGGATCAAATACGATGAGCTTCTCAAGATCTGCGACAGATATCCT 901 ||||||||||||||||||||| ||||||||| | | || ||| || ||||||| Sbjct 193825 GATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCA 193884 Query 902 TACAGAGTCCCTGTCAAAGGAGGATATGAAAACTTCGTATCTAAATATATATGGATCAC 960 ||| |||| || ||||||||||||| || ||| |||||| || ||||| || Sbjct 193885 TACCGAGTACCAATCAAAGGAGGATACCAAGTATTCAATTCTAAACGCATCTGGATAAC 193943 Score = 98.7 bits (108), Expect = 1e-17 Identities = 130/179 (73%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 782 TACTACAAGCCGCGTGGAGAATGGTGGGATGGATACACCGGACAACCGTGCGTTGTTATC 841 |||||||| || || | | ||||||||||||||||| ||||||| | | || Sbjct 198304 TACTACAAACCACGGGCA-AATGGTGGGATGGATACGAACAACAACCGAATATCATAATA 198246 Query 842 GATGACTTCTACGGATGGATCAAATACGATGAGCTTCTCAAGATCTGCGACAGATATCCT 901 ||||||||||||||||||||| ||||||||| | | || ||| || ||||||| Sbjct 198245 GATGACTTCTACGGATGGATCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCA 198186 Query 902 TACAGAGTCCCTGTCAAAGGAGGATATGAAAACTTCGTATCTAAATATATATGGATCAC 960 ||| |||| || ||||||||||||| || ||| |||||| || ||||| || Sbjct 198185 TACCGAGTACCAATCAAAGGAGGATACCAAGTATTCAATTCTAAACGCATCTGGATAAC 198127 Score = 84.2 bits (92), Expect = 3e-13 Identities = 127/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 782 TACTACAAGCCGCGTGGAGAATGGTGGGATGGATACACCGGACAACCGTGCGTTGTTATC 841 |||||||| || || || ||||||||||||| || ||| || || |||| Sbjct 196641 TACTACAAACCTCGAGGCAAATGGTGGGATGGCTATGAACAACAGCCTAATATTATTATT 196582 Query 842 GATGACTTCTACGGATGGATCAAATACGATGAGCTTCTCAAGATCTGCGACAGATATCCT 901 || ||||||||||| ||||| |||||| || || || ||| ||||||||||||| Sbjct 196581 GACGACTTCTACGGTTGGATACCATACGACGACCTA---AAAATCCTCGACAGATATCCT 196525 Query 902 TACAGAGTCCCTGTCAAAGGAGGATATGAAAACTTCGTATCTAAATATATATGGATCACA 961 || || || || | ||||| |||||| ||| ||| || || |||||||| ||| Sbjct 196524 TATAGGGTGCCAATAAAAGGTGGATATCAAATTTTCAACTCGAAGCGAATATGGATAACA 196465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5826974447298