Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_023867.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 1e-17 >seq35 Length=251576 Score = 98.7 bits (108), Expect = 1e-17 Identities = 174/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 889 ATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCGTCAT 948 |||||||||| | | | ||| ||||||| || || || | ||||| | || || || | Sbjct 193909 ATCCTCCTTTGATTGGTACTCGGTATGGATATCGATCTAGGATTTTTAACAAGTCATCGT 193850 Query 949 ATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATT--TTTGTTGTTGGTATCCGTC 1006 || |||||||||||||||||||| ||||| | ||| |||||||| |||||| || Sbjct 193849 ATGGGATCCATCCGTAGAAGTCATCTATTATGA--TATTCGGTTGTTGTTCGTATCCATC 193792 Query 1007 CCACCATAGTCCTCTGGGCTTGTAATATATTGAGTCTGGAGCGTGTGCCATGGCTTCTTC 1066 ||||||| | | | || ||||| ||||| | || || | | | || | || Sbjct 193791 CCACCAT-TTGCCCGTGGTTTGTAGTATATCGGTTCGCCAG---TTTCTAATGCATTTTG 193736 Query 1067 CAATGCTGTTTTGGATTTTCCTGTTCCGGGAAGTCCGAGAAAATAGTAGACCTCAGTTTT 1126 |||||||| | ||||| || || || || |||| ||||||| ||| ||||| Sbjct 193735 GTATGCTGTTCTTGATTTGCCCGTGCCAGGTGGTCCATAGAAATAGTGCACCAATGTTTT 193676 Query 1127 GAAAAATCTG 1136 |||| |||| Sbjct 193675 GAAATCTCTG 193666 Score = 98.7 bits (108), Expect = 1e-17 Identities = 174/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 889 ATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCGTCAT 948 |||||||||| | | | ||| ||||||| || || || | ||||| | || || || | Sbjct 198161 ATCCTCCTTTGATTGGTACTCGGTATGGATATCGATCTAGGATTTTTAACAAGTCATCGT 198220 Query 949 ATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATT--TTTGTTGTTGGTATCCGTC 1006 || |||||||||||||||||||| ||||| | ||| |||||||| |||||| || Sbjct 198221 ATGGGATCCATCCGTAGAAGTCATCTATTATGA--TATTCGGTTGTTGTTCGTATCCATC 198278 Query 1007 CCACCATAGTCCTCTGGGCTTGTAATATATTGAGTCTGGAGCGTGTGCCATGGCTTCTTC 1066 ||||||| | | | || ||||| ||||| | || || | | | || | || Sbjct 198279 CCACCAT-TTGCCCGTGGTTTGTAGTATATCGGTTCGCCAG---TTTCTAATGCATTTTG 198334 Query 1067 CAATGCTGTTTTGGATTTTCCTGTTCCGGGAAGTCCGAGAAAATAGTAGACCTCAGTTTT 1126 |||||||| | ||||| || || || || |||| ||||||| ||| ||||| Sbjct 198335 GTATGCTGTTCTTGATTTGCCCGTGCCAGGTGGTCCATAGAAATAGTGCACCAATGTTTT 198394 Query 1127 GAAAAATCTG 1136 |||| |||| Sbjct 198395 GAAATCTCTG 198404 Score = 80.6 bits (88), Expect = 3e-12 Identities = 182/269 (68%), Gaps = 26/269 (10%) Strand=Plus/Plus Query 848 ATTTGTTGTTATCCATAATTTCTCT----GTTGTAAATTCCTCGAATCCTCCTTTCACTT 903 ||| | ||||||||||| ||| || |||| ||||| | |||| ||||| | | Sbjct 196459 ATTGGATGTTATCCATA--TTCGCTTCGAGTTGAAAATT--TGATATCCACCTTTTATTG 196514 Query 904 GAACTTGGTATGGGTAGCGGTCCATAATTTTGAGCATTTCGTCATATTTTATCCATCCGT 963 | || || || || | ||| | ||||| || ||||| ||| |||||| |||| Sbjct 196515 GCACCCTATAAGGATATCTGTCGAGGATTTTTAGG---TCGTCGTATGGTATCCAACCGT 196571 Query 964 AGAAGTCATCGAT-----TATTACGCATTTTTGTTGTTGGTATCCGTCCCACCATAGTCC 1018 ||||||| || || ||||| || ||||||| || || ||||||||| || Sbjct 196572 AGAAGTCGTCAATAATAATATTAGGC-----TGTTGTTCATAGCCATCCCACCATTTGCC 196626 Query 1019 TCTGGGCTTGTAATATATTGAGTCTGGAGCGTGT-GCCATGGCTTCTTCCAATGCTGTTT 1077 || || ||||| || || | ||| | ||| || |||| || || | || |||| Sbjct 196627 TCGAGGTTTGTAGTAAATGGCCTCT----CCTGTAGCTTTGGCCTCGTCGTAGGCAGTTT 196682 Query 1078 TGGATTTTCCTGTTCCGGGAAGTCCGAGA 1106 | |||||||||||||| ||| | ||| || Sbjct 196683 TTGATTTTCCTGTTCCTGGAGGACCGTGA 196711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5458988691428