Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq35 125 9e-26 >seq35 Length=251576 Score = 125 bits (138), Expect = 9e-26 Identities = 142/189 (75%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 988 ATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGGTAC 1047 ||| || || ||||| ||| |||| | ||| |||| | ||||||||||| ||||| Sbjct 193950 ATTGGAAGTTATCCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTAC 193891 Query 1048 TTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAGAA 1107 | ||| || |||| || ||||| | | ||| |||||| ||||||||||||||| Sbjct 193890 TCGGTATGGATATCGATCTAGGATTTTTAACAAGTCATCGTATGGGATCCATCCGTAGAA 193831 Query 1108 GTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTT 1167 ||| ||||| || | | | | |||||| | |||||| |||||||||| | | | |||||| Sbjct 193830 GTCATCTATTATGATATTCGGTTGTTGTTCGTATCCATCCCACCATT-TGCCCGTGGTTT 193772 Query 1168 GTAGTATAT 1176 ||||||||| Sbjct 193771 GTAGTATAT 193763 Score = 125 bits (138), Expect = 9e-26 Identities = 142/189 (75%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 988 ATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGGTAC 1047 ||| || || ||||| ||| |||| | ||| |||| | ||||||||||| ||||| Sbjct 198120 ATTGGAAGTTATCCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTAC 198179 Query 1048 TTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAGAA 1107 | ||| || |||| || ||||| | | ||| |||||| ||||||||||||||| Sbjct 198180 TCGGTATGGATATCGATCTAGGATTTTTAACAAGTCATCGTATGGGATCCATCCGTAGAA 198239 Query 1108 GTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTT 1167 ||| ||||| || | | | | |||||| | |||||| |||||||||| | | | |||||| Sbjct 198240 GTCATCTATTATGATATTCGGTTGTTGTTCGTATCCATCCCACCATT-TGCCCGTGGTTT 198298 Query 1168 GTAGTATAT 1176 ||||||||| Sbjct 198299 GTAGTATAT 198307 Score = 109 bits (120), Expect = 7e-21 Identities = 141/192 (73%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 988 ATTTGATGTAATCCATATGTGTTTGC--TTGTAAATTCTTGAAAGCCTCCTTTGATCGGT 1045 ||| ||||| |||||||| | || ||| ||||| ||| | || ||||| || || Sbjct 196459 ATTGGATGTTATCCATATTCGCTTCGAGTTGAAAATT--TGATATCCACCTTTTATTGGC 196516 Query 1046 ACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAG 1105 || | || || |||||||| ||||| ||||||||||||| ||||| |||||| Sbjct 196517 ACCCTATAAGGATATCTGTCGAGGATTTT---TAGGTCGTCGTATGGTATCCAACCGTAG 196573 Query 1106 AAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGT 1165 |||||||| ||||| | | | | ||||| | || || |||||||||| |||| ||| Sbjct 196574 AAGTCGTCAATAATAATATTAGGCTGTTGTTCATAGCCATCCCACCATTTGCCTCGAGGT 196633 Query 1166 TTGTAGTATATG 1177 |||||||| ||| Sbjct 196634 TTGTAGTAAATG 196645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5958169368956