Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_023874.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq35 77.0 4e-11 >seq35 Length=251576 Score = 77.0 bits (84), Expect = 4e-11 Identities = 96/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 744 AATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGATGACTTCTATGGCTGGA 803 |||||||||| || ||| || ||| || | | || |||||||||||||| || |||| Sbjct 193784 AATGGTGGGATGGATACGAACAACAACCGAATATCATAATAGATGACTTCTACGGATGGA 193843 Query 804 TAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACACAAGGTTCCAATAAAAG 863 | ||||||||| || | ||||| || |||| ||| || || ||||| |||| Sbjct 193844 TCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAG 193903 Query 864 GAGGATTCGAAG 875 |||||| | ||| Sbjct 193904 GAGGATACCAAG 193915 Score = 77.0 bits (84), Expect = 4e-11 Identities = 96/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 744 AATGGTGGGACGGCTACATGCAGCAAACGTCTGTTATTATAGATGACTTCTATGGCTGGA 803 |||||||||| || ||| || ||| || | | || |||||||||||||| || |||| Sbjct 198286 AATGGTGGGATGGATACGAACAACAACCGAATATCATAATAGATGACTTCTACGGATGGA 198227 Query 804 TAAAATACGATGAACTGCTGAAAATATGTGACAGATACCCACACAAGGTTCCAATAAAAG 863 | ||||||||| || | ||||| || |||| ||| || || ||||| |||| Sbjct 198226 TCCCATACGATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAG 198167 Query 864 GAGGATTCGAAG 875 |||||| | ||| Sbjct 198166 GAGGATACCAAG 198155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5618982498328