Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_023886.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value seq35 113 5e-22 >seq35 Length=251576 Score = 113 bits (124), Expect = 5e-22 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 669 GGTCCACCAGGAACCGGAAAATCAAAAACCGCTCTGGAAAAAGCAACCGCCTACAATACC 728 ||||| |||||||| |||||||||||||| || || | || | || |||| | Sbjct 196707 GGTCCTCCAGGAACAGGAAAATCAAAAACTGCCTACGACGAGGCCAAAGC-TACAGGA-- 196651 Query 729 GACTCCATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGC 788 || |||| || || ||||| || || |||||||||||| ||| |||| ||| ||| Sbjct 196650 GAGGCCATTTACTACAAACCTCGAGGCAAATGGTGGGATGGCTATGAACAACAGCCTAAT 196591 Query 789 GTCATCATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGAC 848 | || || ||||||||||| || |||||| ||||||||| || ||||| ||| Sbjct 196590 ATTATTATTGACGACTTCTACGGTTGGATACCATACGACGA---CCTAAAAATCCTCGAC 196534 Query 849 CGATATCCATACAAGGTTCAAATAAAAGGAGG 880 ||||||| || | ||| | ||||||||| || Sbjct 196533 AGATATCCTTATAGGGTGCCAATAAAAGGTGG 196502 Score = 78.8 bits (86), Expect = 1e-11 Identities = 163/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 658 ACTATTATTGGGGTCCACCAGGAACCGGAAAATCAAAAACCGCTCTGGAAAAAGCAACCG 717 |||||| | || ||||| || || || ||||||| ||| || |||| ||| | Sbjct 193689 ACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGAACAGCATACCAAAATGCATTAG 193748 Query 718 CCTACAATACCGACTCCATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAAC 777 | | | ||| | || || || ||||| || || |||||||||||| || ||| Sbjct 193749 ---AAACTGGCGAACCGATATACTACAAACCACG-GGCAAATGGTGGGATGGATACGAAC 193804 Query 778 AGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTT- 836 | || | | |||| || || |||||||| |||||||| |||||| | |||| || Sbjct 193805 AACAACCGAATATCATAATAGATGACTTCTACGGATGGATCCCATACGATG-ACTTGTTA 193863 Query 837 AAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATTCA 894 ||||| || |||||||||||| || | ||| |||||||| | ||| ||||| Sbjct 193864 AAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGGAGGATACCAAGTATTCA 193921 Score = 78.8 bits (86), Expect = 1e-11 Identities = 163/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 658 ACTATTATTGGGGTCCACCAGGAACCGGAAAATCAAAAACCGCTCTGGAAAAAGCAACCG 717 |||||| | || ||||| || || || ||||||| ||| || |||| ||| | Sbjct 198381 ACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGAACAGCATACCAAAATGCATTAG 198322 Query 718 CCTACAATACCGACTCCATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAAC 777 | | | ||| | || || || ||||| || || |||||||||||| || ||| Sbjct 198321 ---AAACTGGCGAACCGATATACTACAAACCACG-GGCAAATGGTGGGATGGATACGAAC 198266 Query 778 AGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTA 837 | || | | |||| || || |||||||| |||||||| |||||| || ||| ||| Sbjct 198265 AACAACCGAATATCATAATAGATGACTTCTACGGATGGATCCCATACGATGA-CTTGTTA 198207 Query 838 AAATATGT-GACCGATATCCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATTCA 894 ||| | || |||||||||||| || | ||| |||||||| | ||| ||||| Sbjct 198206 AAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGGAGGATACCAAGTATTCA 198149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5462188567566