Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_024700.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value seq35 251 8e-64 >seq35 Length=251576 Score = 251 bits (278), Expect = 8e-64 Identities = 351/489 (72%), Gaps = 16/489 (3%) Strand=Plus/Minus Query 376 TTCGACGATATTTATGTTAGATATTGGAGAGGTCTGTACAAGCTTAAAGAAACGCTTGCT 435 |||||||| || |||||||| ||||||||||||| | || || || || | | | Sbjct 196812 TTCGACGAGATATATGTTAGGCATTGGAGAGGTCTTGAAAAACTCCAATCAATGATCAAT 196753 Query 436 CCGCCACCAGAAAGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTG 495 || || || |||||||||| || |||| | |||||| | ||| ||||| Sbjct 196752 CCTCCTCCTGAAAGAGATTACAAGACGCAAGTGTTTTACTATCACGGTCCTCCAGGAACA 196693 Query 496 GGAAAATCACGTAGAGCTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAA 555 ||||||||| | || || || |||||||||||| || | |||||||||||| Sbjct 196692 GGAAAATCAAAAACTGCCTACGACGAGGCCAAAGCTACAGGAGAGGCCATTTACTACAAA 196633 Query 556 CCCAGAGGAGATTGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTC 615 || |||| | ||||||||||| || |||||||| || ||| |||| || ||||| ||| Sbjct 196632 CCTCGAGGCAAATGGTGGGATGGCTATGAACAACAGCCTAATATTATTATTGACGACTTC 196573 Query 616 TACGGATGGATCAAATACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTA 675 ||||| ||||| ||||||||| | ||||||| | || ||||| || || || || Sbjct 196572 TACGGTTGGATACCATACGACGACC---TAAAAATCCTCGACAGATATCCTTATAGGGTG 196516 Query 676 CCAGTAAAAGGAGGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATC 735 ||| ||||||| ||||| |||||||| ||||| || |||| ||||||||||| ||||| Sbjct 196515 CCAATAAAAGGTGGATATCAAATTTTCAACTCGAAGCGAATATGGATAACATCCAATATT 196456 Query 736 CCCATTGACCAATTATATAAACATTCCCATTTCATTCCCCAAGCC---ATCGAAAGA--C 790 | || || |||||||||||||||||||||||| |||||| || |||| Sbjct 196455 GCACCGGAAAAACAATATAAACATTCCCATTTCATTCCTCAAGCCCTTATTAGAAGAATT 196396 Query 791 GATGTACAAAAATTGAATATATGCAATAAA---TTTATTTTAAACAGAATATCCTCTTAA 847 ||||||| || ||||| | |||||| ||| |||| || | ||||| || Sbjct 196395 GATGTAC-----TTAAATATTTTGAATAAAATTTTTTATTTATACTTGGTGGCCTCTCAA 196341 Query 848 TTGAACATA 856 ||| ||||| Sbjct 196340 TTGCACATA 196332 Score = 210 bits (232), Expect = 2e-51 Identities = 279/386 (72%), Gaps = 1/386 (0%) Strand=Plus/Plus Query 388 TATGTTAGATATTGGAGAGGTCTGTACAAGCTTAAAGAAACGCTTGCTCCGCCACCAGAA 447 ||||| ||||||||||||||| || | || | || || | || ||| || ||| Sbjct 193607 TATGTCAGATATTGGAGAGGTTTGGAGAAATTGGAATCAATGATTAATCCTCCGAAAGAC 193666 Query 448 AGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACGT 507 |||||||| |||| || | || | |||||| ||| || ||| |||||| | Sbjct 193667 AGAGATTTCAAAACATTGGTGCACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGA 193726 Query 508 AGAGCTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGAT 567 | ||| || | | || || || ||| | || ||||||||||| | | | || Sbjct 193727 ACAGCATACCAAAATGCATTAGAAACTGGCGAACCGATATACTACAAACCACGGGCAAAT 193786 Query 568 TGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATC 627 ||||||||||||||||||||||||| ||| | || || || || ||||||||||||||| Sbjct 193787 -GGTGGGATGGATACGAACAACAACCGAATATCATAATAGATGACTTCTACGGATGGATC 193845 Query 628 AAATACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGA 687 |||||| || | |||||||| | ||| |||| |||||| |||||||| | |||||| Sbjct 193846 CCATACGATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGGA 193905 Query 688 GGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCAA 747 ||||||||| | || || || ||| | || |||||||| || ||||| || || || Sbjct 193906 GGATACCAAGTATTCAATTCTAAACGCATCTGGATAACTTCCAATATTCCTCCCGAAAAA 193965 Query 748 TTATATAAACATTCCCATTTCATTCC 773 |||||||||| |||||||||| || Sbjct 193966 CAATATAAACATGCCCATTTCATCCC 193991 Score = 210 bits (232), Expect = 2e-51 Identities = 279/386 (72%), Gaps = 1/386 (0%) Strand=Plus/Minus Query 388 TATGTTAGATATTGGAGAGGTCTGTACAAGCTTAAAGAAACGCTTGCTCCGCCACCAGAA 447 ||||| ||||||||||||||| || | || | || || | || ||| || ||| Sbjct 198463 TATGTCAGATATTGGAGAGGTTTGGAGAAATTGGAATCAATGATTAATCCTCCGAAAGAC 198404 Query 448 AGAGATTTTCCAACAGAAGTTTATTACTACTATGGTGAACCAGGTGTGGGAAAATCACGT 507 |||||||| |||| || | || | |||||| ||| || ||| |||||| | Sbjct 198403 AGAGATTTCAAAACATTGGTGCACTATTTCTATGGACCACCTGGCACGGGCAAATCAAGA 198344 Query 508 AGAGCTTATTCAGAAGCCAAAGCTACAAATGAATCAATTTACTACAAACCCAGAGGAGAT 567 | ||| || | | || || || ||| | || ||||||||||| | | | || Sbjct 198343 ACAGCATACCAAAATGCATTAGAAACTGGCGAACCGATATACTACAAACCACGGGCAAAT 198284 Query 568 TGGTGGGATGGATACGAACAACAACCAAATGTTATCATCGACGATTTCTACGGATGGATC 627 ||||||||||||||||||||||||| ||| | || || || || ||||||||||||||| Sbjct 198283 -GGTGGGATGGATACGAACAACAACCGAATATCATAATAGATGACTTCTACGGATGGATC 198225 Query 628 AAATACGACGAACTATTAAAAATAATGGATAGATACCCATACAGAGTACCAGTAAAAGGA 687 |||||| || | |||||||| | ||| |||| |||||| |||||||| | |||||| Sbjct 198224 CCATACGATGACTTGTTAAAAATCCTAGATCGATATCCATACCGAGTACCAATCAAAGGA 198165 Query 688 GGATACCAAATTTTTAACTCAAAAAGAATTTGGATAACATCTAATATCCCCATTGACCAA 747 ||||||||| | || || || ||| | || |||||||| || ||||| || || || Sbjct 198164 GGATACCAAGTATTCAATTCTAAACGCATCTGGATAACTTCCAATATTCCTCCCGAAAAA 198105 Query 748 TTATATAAACATTCCCATTTCATTCC 773 |||||||||| |||||||||| || Sbjct 198104 CAATATAAACATGCCCATTTCATCCC 198079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5564584603982