Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_025476.1 Length=1865 Score E Sequences producing significant alignments: (Bits) Value seq35 91.5 2e-15 >seq35 Length=251576 Score = 91.5 bits (100), Expect = 2e-15 Identities = 132/183 (72%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 896 TGTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTA 955 ||| |||||||| || || ||| ||| |||||| ||||| | || || || || Sbjct 196465 TGTTATCCATATTCGCTTCGAGTTGAAAATTTGATATCCACCTTTTATTGGCACCCTATA 196524 Query 956 AGGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATC 1015 ||||||||||||| ||| || || ||||||||| ||||| ||||||||||| || Sbjct 196525 AGGATATCTGTCGAGGATTTT---TAGGTCGTCGTATGGTATCCAACCGTAGAAGTCGTC 196581 Query 1016 GATAACAA-CGCAGG--GTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTGTA 1072 |||| || ||| ||||| | || ||||||||||||| || || || ||||| Sbjct 196582 AATAATAATATTAGGCTGTTGTTC---ATAGCCATCCCACCATTTGCCTCGAGGTTTGTA 196638 Query 1073 GTA 1075 ||| Sbjct 196639 GTA 196641 Score = 89.7 bits (98), Expect = 6e-15 Identities = 128/179 (72%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 897 GTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTAA 956 || ||||| || |||||| ||| || ||||||||||||| || |||| ||| Sbjct 193943 GTTATCCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTACTCGGTAT 193884 Query 957 GGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATCG 1016 ||||||| || ||| || | | || |||||| ||||||||||||||||||||| Sbjct 193883 GGATATCGATCTAGGATTTTTAACAAGTCATCGTATGGGATCCATCCGTAGAAGTCATCT 193824 Query 1017 ATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTGTAGTA 1075 || | | |||||| ||||||||||||||||| | | || || |||||||| Sbjct 193823 ATTATGATATTCGGTTGTTGTTCGTATCCATCCCACCATT-TGCCCGTGGTTTGTAGTA 193766 Score = 89.7 bits (98), Expect = 6e-15 Identities = 128/179 (72%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 897 GTGATCCATATATATTTAGATACGAAGTTTTCATATCCTCCTTTGACAGGGACTCTGTAA 956 || ||||| || |||||| ||| || ||||||||||||| || |||| ||| Sbjct 198127 GTTATCCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTACTCGGTAT 198186 Query 957 GGATATCTGTCGCAGATCTTGAGAAGCTCGTCGTATTTGATCCATCCGTAGAAGTCATCG 1016 ||||||| || ||| || | | || |||||| ||||||||||||||||||||| Sbjct 198187 GGATATCGATCTAGGATTTTTAACAAGTCATCGTATGGGATCCATCCGTAGAAGTCATCT 198246 Query 1017 ATAACAACGCAGGGTTGTCCGGTGTATCCATCCCACCATTCTCCGCGCGGCTTGTAGTA 1075 || | | |||||| ||||||||||||||||| | | || || |||||||| Sbjct 198247 ATTATGATATTCGGTTGTTGTTCGTATCCATCCCACCATT-TGCCCGTGGTTTGTAGTA 198304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5858973208678