Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_025791.1 Length=1755 Score E Sequences producing significant alignments: (Bits) Value seq35 87.8 2e-14 >seq35 Length=251576 Score = 87.8 bits (96), Expect = 2e-14 Identities = 168/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 900 ATCCTCCTTTAATCTGTACCTTGTATGGGTAGCGGTCCATTATTTTCAGCATTTCGTCAT 959 |||| ||||| || | ||| | || || || | ||| | ||||| || ||||| | Sbjct 196500 ATCCACCTTTTATTGGCACCCTATAAGGATATCTGTCGAGGATTTTTAGG---TCGTCGT 196556 Query 960 ACTTTATCCAGCCGTAGAAGTCGTCGATGATTACGCAATCATGTTGTTGATATCCGTCCC 1019 | |||||| |||||||||||||| || || | | ||||||| ||| || |||| Sbjct 196557 ATGGTATCCAACCGTAGAAGTCGTCAATAATAATATTAGGCTGTTGTTCATAGCCATCCC 196616 Query 1020 ACCATAGTCCACGAGGTTTATAGTATATGGAAGTCCCTCTTTGTTTAGCCTCCTCAAGTG 1079 ||||| || |||||||| ||||| |||| ||| | ||| ||||| || | Sbjct 196617 ACCATTTGCCTCGAGGTTTGTAGTAAATGGCCTCTCCTGTAGCTTTGGCCTCGTCGTAGG 196676 Query 1080 CACGCTTTGATTTTCCGGAGCCAGGTGGTCCCCAATAGTAGTATACTTCTGTTTTGAAAT 1139 || ||||||||||| | || || || || |||||| | |||| || ||| ||| Sbjct 196677 CAGTTTTTGATTTTCCTGTTCCTGGAGGACCGTGATAGTAAAACACTTGCGTCTTGTAAT 196736 Query 1140 CACGTTC 1146 | | ||| Sbjct 196737 CTCTTTC 196743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5506986833498