Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_025792.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq35 86.0 7e-14 >seq35 Length=251576 Score = 86.0 bits (94), Expect = 7e-14 Identities = 128/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 967 CCATATGCGTGTACTTGTAAATTCCTCGAAcccccccTTTATTTGTACTTTGTAAGGGTA 1026 ||| |||||| || | ||| | | | | || || || ||| ||||| ||| || || Sbjct 193938 CCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTACTCGGTATGGATA 193879 Query 1027 TCTGTC-AGTAATTTTGAGTAGTTCGTCGTATTTGATCCACCCGTAGAAGTCGTCGATGA 1085 || || || | |||| | ||| | |||||| |||||| ||||||||||| || || | Sbjct 193878 TCGATCTAGGATTTTTAACAAGT-CATCGTATGGGATCCATCCGTAGAAGTCATCTATTA 193820 Query 1086 TGACGTTCTCTTGTTGCTTGTATCCGTCCCACCACAAGCCCCTTGGCTTGTAGTAGAT 1143 ||| ||| |||||| | |||||| |||||||| | ||| ||| |||||||| || Sbjct 193819 TGATATTCGGTTGTTGTTCGTATCCATCCCACCATTTG-CCCGTGGTTTGTAGTATAT 193763 Score = 86.0 bits (94), Expect = 7e-14 Identities = 128/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 967 CCATATGCGTGTACTTGTAAATTCCTCGAAcccccccTTTATTTGTACTTTGTAAGGGTA 1026 ||| |||||| || | ||| | | | | || || || ||| ||||| ||| || || Sbjct 198132 CCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTACTCGGTATGGATA 198191 Query 1027 TCTGTC-AGTAATTTTGAGTAGTTCGTCGTATTTGATCCACCCGTAGAAGTCGTCGATGA 1085 || || || | |||| | ||| | |||||| |||||| ||||||||||| || || | Sbjct 198192 TCGATCTAGGATTTTTAACAAGT-CATCGTATGGGATCCATCCGTAGAAGTCATCTATTA 198250 Query 1086 TGACGTTCTCTTGTTGCTTGTATCCGTCCCACCACAAGCCCCTTGGCTTGTAGTAGAT 1143 ||| ||| |||||| | |||||| |||||||| | ||| ||| |||||||| || Sbjct 198251 TGATATTCGGTTGTTGTTCGTATCCATCCCACCATTTG-CCCGTGGTTTGTAGTATAT 198307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5618982498328