Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_032682.1 Length=1724 Score E Sequences producing significant alignments: (Bits) Value seq35 105 7e-20 >seq35 Length=251576 Score = 105 bits (116), Expect = 7e-20 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 921 GTTATCCATATACGCTTGCTGTTGAAAACCTCGTACGAGCCTTTGACAGGTACTCGGTAG 980 |||||||| || || || ||||| || | ||| ||||||| ||||||||||| Sbjct 193943 GTTATCCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTACTCGGTAT 193884 Query 981 GGATATCTGTCGGTTATTTTTAGTAGTTCGTCAAGTTCAAGCCATCCGTAGAAATCATCG 1040 ||||||| || ||||||| | || || | | |||||||||||| ||||| Sbjct 193883 GGATATCGATCTAGGATTTTTAACAAGTCATCGTATGGGATCCATCCGTAGAAGTCATCT 193824 Query 1041 ATAATAACATTTTCTTGTTGTTTGTAGCCATCCCACCAGTTACCACGAGCCTTGTAGAAA 1100 || || | ||| |||||||| ||| ||||||||||| || || || | |||||| | Sbjct 193823 ATTATGATATTCGGTTGTTGTTCGTATCCATCCCACCATTTGCC-CGTGGTTTGTAGTAT 193765 Query 1101 ATAGGTTCGTTTGTTTGCGTGGCCATTTCAGCGGCTTTTCTGGATTTACCCGTTCCAGTT 1160 || |||||| |||| || ||| ||| |||| ||||| ||||| |||| | Sbjct 193764 ATCGGTTCGCCAGTTTCTAATGCATTTTGGTATGCTGTTCTTGATTTGCCCGTGCCAGGT 193705 Query 1161 GGACCA-ATATATACATATACCTCGGTTTTGAAATCCCT 1198 || ||| | | ||| | ||| ||||||||||| || Sbjct 193704 GGTCCATAGAAATA-GTGCACCAATGTTTTGAAATCTCT 193667 Score = 105 bits (116), Expect = 7e-20 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 921 GTTATCCATATACGCTTGCTGTTGAAAACCTCGTACGAGCCTTTGACAGGTACTCGGTAG 980 |||||||| || || || ||||| || | ||| ||||||| ||||||||||| Sbjct 198127 GTTATCCAGATGCGTTTAGAATTGAATACTTGGTATCCTCCTTTGATTGGTACTCGGTAT 198186 Query 981 GGATATCTGTCGGTTATTTTTAGTAGTTCGTCAAGTTCAAGCCATCCGTAGAAATCATCG 1040 ||||||| || ||||||| | || || | | |||||||||||| ||||| Sbjct 198187 GGATATCGATCTAGGATTTTTAACAAGTCATCGTATGGGATCCATCCGTAGAAGTCATCT 198246 Query 1041 ATAATAACATTTTCTTGTTGTTTGTAGCCATCCCACCAGTTACCACGAGCCTTGTAGAAA 1100 || || | ||| |||||||| ||| ||||||||||| || || || | |||||| | Sbjct 198247 ATTATGATATTCGGTTGTTGTTCGTATCCATCCCACCATTTGCC-CGTGGTTTGTAGTAT 198305 Query 1101 ATAGGTTCGTTTGTTTGCGTGGCCATTTCAGCGGCTTTTCTGGATTTACCCGTTCCAGTT 1160 || |||||| |||| || ||| ||| |||| ||||| ||||| |||| | Sbjct 198306 ATCGGTTCGCCAGTTTCTAATGCATTTTGGTATGCTGTTCTTGATTTGCCCGTGCCAGGT 198365 Query 1161 GGACCA-ATATATACATATACCTCGGTTTTGAAATCCCT 1198 || ||| | | ||| | ||| ||||||||||| || Sbjct 198366 GGTCCATAGAAATA-GTGCACCAATGTTTTGAAATCTCT 198403 Score = 98.7 bits (108), Expect = 1e-17 Identities = 132/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 920 TGTTATCCATATACGCTTGCTGTTGAAAACCTCGTACGAGCCTTTGACAGGTACTCGGTA 979 |||||||||||| ||||| |||||||| | || ||||| | || || | || Sbjct 196465 TGTTATCCATATTCGCTTCGAGTTGAAAATTTGATATCCACCTTTTATTGGCACCCTATA 196524 Query 980 GGGATATCTGTCGGTTATTTTTAGTAGTTCGTCAAGTTCAAGCCATCCGTAGAAATCATC 1039 |||||||||||| |||||||| |||| || | ||| |||||||| || || Sbjct 196525 AGGATATCTGTCGAGGATTTTTAGGTCGTCGTATGGT---ATCCAACCGTAGAAGTCGTC 196581 Query 1040 GATAATAACATTTTCTTGTTGTTTGTAGCCATCCCACCAGTTACCACGAGCCTTGTAGAA 1099 ||||||| ||| ||||||| |||||||||||||| || || |||| |||||| | Sbjct 196582 AATAATAATATTAGGCTGTTGTTCATAGCCATCCCACCATTTGCCTCGAGGTTTGTAGTA 196641 Query 1100 AAT 1102 ||| Sbjct 196642 AAT 196644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5407790673220