Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq8224 975 0.0 >seq8224 Length=5426 Score = 975 bits (1080), Expect = 0.0 Identities = 1335/1851 (72%), Gaps = 74/1851 (4%) Strand=Plus/Minus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 2501 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 2442 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 2441 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 2382 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2381 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2322 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 2321 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 2262 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 2261 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 2202 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939 |||||| ||||||||||| || ||| || || || |||| ||| ||||| Sbjct 2201 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 2143 Query 2940 AATGCTCGTCAGAAACTTCGTGCA-----AGTGGAGTAATGT---AATATGAAGAAAGCT 2991 || | ||||| ||| | |||||| |||| ||||||| || | || || | | Sbjct 2142 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTT 2083 Query 2992 C-GTCGTTC-CCCTTCTCGT----------------------AAG--------AAAGGCG 3019 | | || || |||| |||| ||| ||||||| Sbjct 2082 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 2023 Query 3020 CTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCT---AT 3076 ||||||| ||||||||||| ||| ||||||||||| ||||||||||||||| | Sbjct 2022 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 1963 Query 3077 AAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCT 3136 ||||| | ||||| || | |||||| ||| || ||||| || || |||||||| Sbjct 1962 GAGGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCC 1904 Query 3137 CATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGACTCCTGTT 3196 ||||| | || ||| || | ||||||||| | | |||| ||||| ||| Sbjct 1903 CATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTT 1844 Query 3197 GTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCCGCTTCGT 3256 | || || || || || ||| | || |||||||| | || ||||| || | ||| Sbjct 1843 ATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGT 1784 Query 3257 CGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCATCGTCAT 3316 |||||||||||| |||||||| ||| ||| | || || |||||||||||||||||||| Sbjct 1783 CGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC 1724 Query 3317 GTATATGGTGAGCAGTGGATTGATTTTATGAAGCAAGGTGTTGATGCTGCTCCTTTGGCC 3376 || |||||||| ||||||||| | || |||||| | |||||| |||| ||||| | | Sbjct 1723 GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCG 1664 Query 3377 CCTGTTCAGTGCTCTCGCGGTTGGGATAGTGCTCA------GTATCTTGCTACTATTCCG 3430 ||||| | | || |||| ||| || || | ||||| || ||| Sbjct 1663 ACTGTTAA---CACTACTGGTT---ATATTGACCATGCCGCTTTTCTTGGCACGATTAAC 1610 Query 3431 TCTAGTAACTTAAAGGTTCCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTACAATA 3488 || || | || | |||||| ||| || ||| ||||| |||| || || || | Sbjct 1609 CCTGATACCAATAAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTATAACA 1552 Query 3489 ATTACTTTAAAGCTCCGTGGATGGATGACCTGACTTATGCCAACCCGTCTAATATGGAGG 3548 | || |||||||| ||||||||| ||||| || | || ||||| | | | | Sbjct 1551 ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATC 1492 Query 3549 GTGAAGATGTTCGTTTTGGTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGC 3608 || |||| ||||| |||| | ||| || | | |||| |||||||||||||||| Sbjct 1491 AAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGC 1432 Query 3609 TTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACTGAAACCAACTCCATTGACATTA 3668 ||||||| || ||||| |||| ||| |||| |||| || |||||||||| Sbjct 1431 TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTA 1372 Query 3669 TGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTCATGA 3728 ||||| |||| || ||||||||| | || |||||||| || || ||||||||||||||| Sbjct 1371 TGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGC 1312 Query 3729 CTCGTTATCGTGATATTGTTAACGAATTTGGAGGTAGTACTTCTTATGATGCGGATAATC 3788 ||||| | |||| || || ||||||||||| || |||||||| || || || | Sbjct 1311 AGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACC 1252 Query 3789 GTCCTTTGCTTGTTATGCATTCTGAGTTCTGGGCCTCAGGCTATGATGTTGACGGCACCG 3848 ||||||| ||||| |||| ||| | ||||||| || |||||||||||||| || || | Sbjct 1251 GTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTG 1192 Query 3849 ACCAAAGCTCTCTCGGTCAGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGCATTCAGTAC 3908 |||||| || | || ||||| || |||||||| || ||||| | ||| ||||| || | Sbjct 1191 ACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC 1132 Query 3909 CGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGC 3968 |||| ||||| |||||||||||||||||||| || || || | || || || |||| Sbjct 1131 CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGC 1072 Query 3969 CGACT--CATGAAATGGAGATGCATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGA 4026 | ||| | ||| ||||| || ||| | | ||||| | |||||||||||| || Sbjct 1071 CTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGA 1014 Query 4027 TTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTC 4085 | | ||| | ||||||| |||| ||||| |||||||| || ||||| || |||| Sbjct 1013 TATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGG 955 Query 4086 AGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATC 4145 | | |||| |||||| | | | ||||||||||| ||||| ||||||||||||| Sbjct 954 ATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATC 895 Query 4146 G-CATGCAGCCTGATCG--CGTTGCATTGCCGTATAACTATCTTGATGGTTTTCCGTTCT 4202 | |||| |||| ||| ||| | | ||| || |||||| || || || ||| Sbjct 894 GTTATGC-GCCT--TCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCA 838 Query 4203 ATAGCGCGATTCCGTCTGATGATATTAAGCAGCGCGTTCTGGTTAATACTGATAACTACG 4262 | | || |||| |||| | | | ||||| || || || | || | Sbjct 837 TTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATG 778 Query 4263 ATGAGGTTTTCCAGTCTATGCAGCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCA 4322 | || ||||||||| | ||| | ||| ||||||| ||| ||| |||||| | Sbjct 777 ACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGA 718 Query 4323 CCATTTATCGTAATATGCCGACCACTCGCGACTCTATTATGACCTCTTGAT 4373 || ||||||| ||| |||||||||||||||| || || ||||| || |||| Sbjct 717 CCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 667 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 3775 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3716 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 3715 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3656 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 3655 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3596 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 3595 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3538 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 3537 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 3479 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 3478 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 3419 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 3418 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 3381 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 5070 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 5011 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 5010 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 4954 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 4953 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 4894 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 4893 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 4834 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 4833 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 4774 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 4773 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 4717 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 4716 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 4673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19298879531776