Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protopolystoma_20xenopodis_20[genbank_20GCA_5F000950455.1_202014-09-
26] 316,398 sequences; 617,344,661 total letters
Query= NC_001730.1
Length=6089
Score E
Sequences producing significant alignments: (Bits) Value
seq26622 390 4e-105
>seq26622
Length=4617
Score = 390 bits (432), Expect = 4e-105
Identities = 574/809 (71%), Gaps = 54/809 (7%)
Strand=Plus/Plus
Query 2740 TTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCGG 2799
||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| |
Sbjct 3812 TTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTG 3871
Query 2800 AGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCG 2859
| |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||||
Sbjct 3872 AATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCG 3931
Query 2860 CGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAATG 2919
||| ||| ||||| | |||||| || || | | | ||| || ||||| || |
Sbjct 3932 CGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACG 3991
Query 2920 CTCGTCAGAAATTACGCGCAAATGGGTTGA---AATG---ATATGAAAAAAGCACGT--- 2970
||||| |||||||| ||| | || ||| |||| | | | ||||| ||||
Sbjct 3992 TGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTCT 4049
Query 2971 --CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGCT 2997
|| || || | |||||| ||||||| |||
Sbjct 4050 GGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCT 4109
Query 2998 CGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTAA 3053
|| || ||||||||||| ||| || |||||||| ||| |||||| ||| ||| |
Sbjct 4110 CGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGA 4169
Query 3054 GGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCAT 3113
|||| | | ||||||||| | |||||| || || ||| |||||| || |||
Sbjct 4170 GGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCAT 4229
Query 3114 CTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTT 3170
|||| ||| ||| ||| | || ||||||||| | | || ||||| ||||| |||
Sbjct 4230 CTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTT 4286
Query 3171 ATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGT 3230
||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| |||||
Sbjct 4287 ATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGT 4346
Query 3231 CGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCAT 3290
||||| | || ||||| |||| || ||| |||| ||||| ||| | || ||||||||
Sbjct 4347 CGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCAC 4406
Query 3291 GTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCT 3350
||||||||||| ||||||||| | || ||| ||||||||| |||| | || || ||
Sbjct 4407 GTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCG 4466
Query 3351 TCCGTTACTACTACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAG 3410
| |||| ||| || ||| || |||| | || | |||| || ||| ||| |
Sbjct 4467 ACTGTTAACACTGCTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGAT 4526
Query 3411 AGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTC 3470
| ||| || |||||| |||| |||| |||| ||||||| ||||| ||||||||
Sbjct 4527 ACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTT 4586
Query 3471 CGTGCGCCGTGGATGCCTGAGCGTACTGA 3499
||||||||||||||||| ||||| ||
Sbjct 4587 AAAGCGCCGTGGATGCCTGACCGTACCGA 4615
Score = 158 bits (174), Expect = 5e-35
Identities = 280/400 (70%), Gaps = 10/400 (3%)
Strand=Plus/Plus
Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351
|| ||||| | || |||||||| | || | || || ||||| || |||| || ||
Sbjct 2355 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2414
Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411
|| || ||||||||| | ||||| |||||| | | ||||||| ||||| ||
Sbjct 2415 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2474
Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471
|| ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||
Sbjct 2475 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 2534
Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529
| || | |||| | || |||||||||| || | ||||| | ||||||| ||||
Sbjct 2535 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 2592
Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589
|| || || ||||||||| || ||||| | |||||| ||| |||||| |||| |
Sbjct 2593 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 2651
Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646
| || | | |||||| ||||| |||| | | || || || ||||| || |
Sbjct 2652 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 2709
Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686
| ||||||| ||| || |||||||| |||||||||||
Sbjct 2710 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 2749
Score = 87.8 bits (96), Expect = 7e-14
Identities = 241/360 (67%), Gaps = 32/360 (9%)
Strand=Plus/Plus
Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311
||||||||||||| | ||||| ||||| || |||||||||||| ||| | | |||
Sbjct 866 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 923
Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369
| || | | |||||||| ||||||| | |||||||| | || | | || |||
Sbjct 924 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 980
Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429
| | |||| | ||| || ||| | | | ||||||||| | ||| ||
Sbjct 981 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 1027
Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487
| ||||| |||| || || ||| || |||||||| || ||||||||
Sbjct 1028 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 1083
Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547
| || || || || |||||||| || | |||||||||||||| |||| ||||||| |||
Sbjct 1084 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 1143
Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604
| || | | || | | ||||| ||||||||| | ||||||||||||||
Sbjct 1144 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 1200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 19300654344616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |