Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq35511 426 6e-116 seq35230 174 6e-40 seq45717 111 6e-21 seq38000 82.4 3e-12 >seq35511 Length=1595 Score = 426 bits (472), Expect = 6e-116 Identities = 522/711 (73%), Gaps = 51/711 (7%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 213 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 272 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 273 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 332 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 333 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 392 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 393 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 452 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 453 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 512 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 513 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 572 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGA--TATGAAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || | | | ||| ||| |||| Sbjct 573 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 632 Query 2972 -CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGCTC 2999 || || ||| ||||| |||||||| |||| Sbjct 633 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 692 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 693 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 752 Query 3058 G--AAATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 | ||||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 753 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 809 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 810 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 867 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTC 3224 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| Sbjct 868 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTC 918 Score = 376 bits (416), Expect = 1e-100 Identities = 456/620 (74%), Gaps = 6/620 (1%) Strand=Plus/Plus Query 3283 CCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCT 3342 || |||||||| |||||||| || ||||||||| |||| ||| |||||||||||||| Sbjct 977 CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCC 1036 Query 3343 CAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTACT 3402 ||||| || |||||| | | | ||| |||||||| | || | | || || Sbjct 1037 ACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACG 1096 Query 3403 ATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATT 3459 ||| |||| | ||||| || |||||| |||| |||| | ||| |||| || Sbjct 1097 ATTAACCCTGATACCAATAA---AATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATC 1153 Query 3460 TACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAAT 3519 || || |||||||| || |||||||||||||| ||||||||||| ||||| | | Sbjct 1154 TATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAG 1213 Query 3520 CTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCT 3579 |||||| | ||||||||||||||| | |||||||||||||| || ||||| |||||| || Sbjct 1214 CTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACT 1273 Query 3580 GCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATT 3639 |||||||| ||||| || || | | || ||||| | | | || || ||| Sbjct 1274 GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATT 1333 Query 3640 GATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTAC 3699 || ||||||||| ||||||| |||||||| | | || ||||| || || ||| |||| Sbjct 1334 GACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTAC 1393 Query 3700 TTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCC 3759 || ||||||||||||| ||||||||| || ||||| ||| |||||| ||||| || Sbjct 1394 TTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCT 1453 Query 3760 GATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACGTTGAC 3819 || ||||| || || ||||| |||| | | | ||||||| || || || || ||||| Sbjct 1454 GACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGAT 1513 Query 3820 GGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAACAC 3879 || || |||||| | || | || || || |||||||| || || ||||| | |||||| Sbjct 1514 GGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACAT 1573 Query 3880 TCAGTGCCGCGATTCTTCGT 3899 || |||||||| ||||| || Sbjct 1574 TCTGTGCCGCGTTTCTTTGT 1593 >seq35230 Length=1623 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 914 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 973 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 974 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1033 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1034 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1093 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1094 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1151 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1152 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1210 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 1211 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1270 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 1271 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1308 >seq45717 Length=879 Score = 111 bits (122), Expect = 6e-21 Identities = 337/519 (65%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 3841 GGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTG 3900 || || || |||||||| || || ||||| | |||||| || |||||||| ||||| || Sbjct 876 GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTT 817 Query 3901 CCTGAGCATGGTGTCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTG 3960 ||||||||||| ||| | ||| | || || |||| || ||||||| | Sbjct 816 CCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA 757 Query 3961 GAGCACCATTATCTTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCG 4020 ||| || || ||| | ||| | || || |||||||| ||||||||||||| Sbjct 756 GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCT 697 Query 4021 GCTCTGATTGGTAACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGG 4079 | | || ||| |||||||| || || || ||| ||| | ||| | |||||| ||| Sbjct 696 GTTTTGTATGGCAACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGG 638 Query 4080 TCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTA 4139 | ||| || ||| |||| |||| ||| | ||||||||| | ||| || Sbjct 637 TGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTA 578 Query 4140 CGTTAACTTTAAGTATCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTAC 4199 ||| | ||||| | | | || ||||| ||| || | || ||| Sbjct 577 TGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC------- 525 Query 4200 ATCTACTGGTGATAATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTG 4259 || |||||| || | || ||| | ||| |||| || || || ||||| || Sbjct 524 --CTTCTGGTG---ATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTG 470 Query 4260 CTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTA 4319 |||||||| |||||| | |||||||| | |||| | | ||| || | ||||| Sbjct 469 TTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTA 410 Query 4320 TCGCCATATGCCTACTGTACGTGATTCCATTATGACCTC 4358 |||| || |||| || || ||||| || ||||| || Sbjct 409 TCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 371 >seq38000 Length=1362 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 534 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 475 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 474 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19350099342960