Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq35230 634 2e-178 seq35511 338 2e-89 seq38000 163 1e-36 seq45717 113 2e-21 >seq35230 Length=1623 Score = 634 bits (702), Expect = 2e-178 Identities = 747/1008 (74%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521 |||| || |||||| | ||||||| | |||||| |||||||||||||||||||||| Sbjct 612 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 671 Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581 |||||||| ||| || | || | ||| | | || || | || ||| Sbjct 672 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 730 Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640 | || | || ||| | | | | || || ||||| ||||| |||| || || || Sbjct 731 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 790 Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700 || | || || ||| |||| |||||||| |||| | | |||||| || |||||| Sbjct 791 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 850 Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760 || || || | |||||| | |||| | || |||||||| ||||| || ||| || Sbjct 851 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 910 Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820 | || |||| | |||| || || ||||| || | || || ||||| ||| ||| || Sbjct 911 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 970 Query 821 TATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGGTCGTATGGTGCTTACT 880 |||||||||||||||||| | |||||||| || |||||||||||||||||||| ||| || Sbjct 971 TATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCT 1030 Query 881 GCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCAGTATTTTTGTGTGCCA 940 ||||| |||||| || |||| ||| |||||||||||||||||||||||||||| Sbjct 1031 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 1090 Query 941 GAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCATCTTATGCGCACACTT 1000 |||||||||||| | || ||||| |||||||| || ||||| ||||||| |||||| Sbjct 1091 GAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTT 1150 Query 1001 CCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCATCAATCGGCAAATAAAT 1060 ||| ||| | ||||||| || ||| | |||||||| || || ||||| Sbjct 1151 CCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAAT 1210 Query 1061 AGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTACTCCCAA 1120 ||||||||||| |||||||||||||||||| ||||||||||||||| || ||| | || Sbjct 1211 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1270 Query 1121 GACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAAGGGTGAACCCCTTAAA 1180 ||||| || || || |||| ||| | |||||||| || | || ||||| || |||||| Sbjct 1271 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAA 1330 Query 1181 GCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGTTAACAAAAAATCAGAT 1240 |||||| ||||||||||| || ||||| || |||||||||||||||||||| |||||| Sbjct 1331 GCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGAT 1390 Query 1241 ATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAA 1300 || ||| | || | ||||| ||||| ||||||||||||||| ||||| |||||||| Sbjct 1391 ATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAG 1450 Query 1301 ATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTCGCAATTTCGGAATGAAA 1360 | || | |||||||| |||||||||| ||||| ||||| ||||| |||||| Sbjct 1451 CTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAA 1510 Query 1361 CTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAACTGACCCAAGTGGGTTAC 1420 || | ||||| | | ||||| |||| | | || |||| ||| | |||||||| Sbjct 1511 ATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTAC 1570 Query 1421 GACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAG 1468 |||| ||| ||||||||| | || |||||||||||||| || | |||| Sbjct 1571 GACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAG 1618 >seq35511 Length=1595 Score = 338 bits (374), Expect = 2e-89 Identities = 445/608 (73%), Gaps = 13/608 (2%) Strand=Plus/Plus Query 1834 AATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGT 1893 |||||| | || | || ||||||||||||| | || || |||||| || |||||| Sbjct 7 AATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGT 66 Query 1894 AAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGAC 1953 | | | || | ||||||| | ||||| ||||| || |||| || ||| Sbjct 67 AGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTT 126 Query 1954 ACAAACCACAAA--GGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTT 2007 |||||| || || || ||||| | | |||| || ||| | ||| || Sbjct 127 C--AACCACTAATAGGTAA--GAAATCA-TGAGTCAAGTTACTGAACAATCCGTACGTTT 181 Query 2008 TCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGA 2067 || || ||| | || ||||| || || ||||| || ||| | ||| | || || || || Sbjct 182 CCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGA 241 Query 2068 GGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGC 2127 || ||||| || || | || | || || ||||||||||| ||||| || || || Sbjct 242 AGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGC 301 Query 2128 TCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCT 2186 ||| || ||| | ||||||||||| ||||| || ||||||||||| || || ||||||| Sbjct 302 TCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCT 360 Query 2187 TTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACA 2246 ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| Sbjct 361 TTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACA 420 Query 2247 TCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTG 2306 | ||||| |||||||||||||||||||| ||||| ||||| |||||||| | ||||| | Sbjct 421 TTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCG 480 Query 2307 TTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGGAA 2366 | || || || ||||||||| ||||| ||||||| || || | | ||| ||||| |||| Sbjct 481 TCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAA 540 Query 2367 ACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGGTG 2426 ||| || || | | |||| ||| |||| | ||| || | ||||| || |||| | Sbjct 541 ACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG 600 Query 2427 TCATGTAA 2434 | |||||| Sbjct 601 TGATGTAA 608 Score = 250 bits (276), Expect = 9e-63 Identities = 436/631 (69%), Gaps = 20/631 (3%) Strand=Plus/Plus Query 2814 TCCCACACCGTCATATCTACGGTCAGCAGTGGATTAACTTTATGAAGGATGGCGTTAATG 2873 |||| || ||||| | || ||| | ||||||||||| || ||||||||||| ||||||| Sbjct 975 TCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATG 1034 Query 2874 CCTCCCCTCTTCCTCCTGTTACATGCTCCTCTGGTTGG---GACTCTGCTGCTTATCTCG 2930 || | ||||| || |||||| | | |||||| ||| ||| |||| ||| | Sbjct 1035 CCACTCCTCTCCCGACTGTTAA---CACTACTGGTTATATTGACCATGCCGCTTTTCTTG 1091 Query 2931 GTACCATTCCGTCTTCTACCCTTAAAGTGCCTAAATTCTTACATCAGGGCTATCTGAATA 2990 | || ||| || |||| |||| | ||||| || |||||| ||| |||||| Sbjct 1092 GCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATA 1151 Query 2991 TTTATAATAACTACTTCAAACCGCCTTGGTCTGATGACTTAACTTAC----GCTAACCCA 3046 | ||||| ||||| || ||| |||| ||| ||| || | | ||| |||||||| Sbjct 1152 TCTATAACAACTATTTTAAAGCGCCGTGG----ATGCCTGACCGTACCGAGGCTAACCCT 1207 Query 3047 TCCAATATGCCTTCTGAGGATTATAAATGG---GGCGTACGTGTCGCTAACCTTAAATCT 3103 ||| || | | | ||| || | || | ||| | | || ||| Sbjct 1208 ---AATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC 1264 Query 3104 ATCTGGACTGCGCCACTTCCACCGGATACTCGTACATCTGAAAACATGACTACTGGTACA 3163 || |||||||| || ||||| || || ||| ||| | ||||| ||| ||| Sbjct 1265 ATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACC 1324 Query 3164 TCCACTATTGACATTATGGGCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAA 3223 | |||||||||||||||| || ||||| || || ||||| || ||||| || || ||| Sbjct 1325 ACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAA 1384 Query 3224 CGTGATTACTTCATGACCCGTTACCGTGACATTATGAAAGAGTTCGGCGGTCATACATCC 3283 ||||||||||||||| ||||||| ||| |||| || || ||| | || || Sbjct 1385 CGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCT 1444 Query 3284 TATGATGGTGACAATCGTCCTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTAT 3343 ||||| | |||||| |||||| | || ||||||||||| | | ||||||||||||||| Sbjct 1445 TATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTAT 1504 Query 3344 GACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACC 3403 || || || || ||||||||| | || | || || || |||||||| ||||| |||||| Sbjct 1505 GATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACC 1564 Query 3404 TTCAATCACAAAGTCCCACGCTTCTATGTTC 3434 | || || || || || |||| ||||| Sbjct 1565 TATAAACATTCTGTGCCGCGTTTCTTTGTTC 1595 >seq38000 Length=1362 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 511 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 452 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 451 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 392 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 391 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 332 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 331 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 279 Score = 154 bits (170), Expect = 5e-34 Identities = 325/482 (67%), Gaps = 17/482 (4%) Strand=Plus/Minus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 1058 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 999 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 998 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 939 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 938 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 879 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801 ||| |||||| || | || || | ||||| | | | ||||| | || | ||| Sbjct 878 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 820 Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849 | ||| | | || | | || || ||| | | | |||| | Sbjct 819 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 760 Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906 | || || || ||| | ||||||||| |||| || || ||||| || || | Sbjct 759 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 700 Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966 |||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 699 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 640 Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTG 5026 | | || ||| ||||| || || | ||||| || ||||| || || ||||| || | Sbjct 639 CTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGG 580 Query 5027 AC 5028 || Sbjct 579 AC 578 >seq45717 Length=879 Score = 113 bits (124), Expect = 2e-21 Identities = 203/290 (70%), Gaps = 10/290 (3%) Strand=Plus/Minus Query 3374 GGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTATGTT 3433 || || || |||||||| ||||| ||||||| || || || || || |||| |||| Sbjct 876 GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTT 817 Query 3434 CCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATGAAA 3491 ||||||||| || || | ||||| ||| || ||| |||||||||||| | ||| Sbjct 816 CCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA 757 Query 3492 TGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGATATTGCTTGTGACC 3551 || || || || ||| | ||||| || |||||||||||||||||| | |||| Sbjct 756 --GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACC 699 Query 3552 CTGCACTG-ATGGCTAACCTGCCACCTCGTGAAGTATCCTTAAAAGAATTCTTCC--ACT 3608 ||| || ||||| ||| |||| || |||||| | || | || || | |||| || Sbjct 698 CTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCT 640 Query 3609 CCTCACCCGATTCTGCTAAATTCAAAATCGCTGAGGGCCAATGGTATCGT 3658 | | || ||| || || || || |||||||| || ||||||||| Sbjct 639 GGTGATTCG--TCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGT 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17722734644200