Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq35230 600 4e-168 seq35511 491 2e-135 seq38000 194 6e-46 >seq35230 Length=1623 Score = 600 bits (664), Expect = 4e-168 Identities = 625/818 (76%), Gaps = 4/818 (0%) Strand=Plus/Plus Query 653 AAGGGTATTAAGGATGAATGCTCGAAAATCCTTGAGGAATCCACCATGAAATCACGTAGA 712 || |||||||||||||| || || | | | || |||| ||||| |||||||| |||||| Sbjct 803 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 862 Query 713 GGCTTTACCGTACAAAGACTAATGAATGCTATGCGCACTGCCCACACTGAGGGCTGGTAC 772 |||||| | | || | | |||||||| ||||| || || |||| || |||| Sbjct 863 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 922 Query 773 GTTGTATTCGATACTCTTACTCTCGCCGATGACCGCCTTAAGGATTTCTATGATAATCCC 832 | || || || ||||| || | || || ||||| | ||| || |||||||||||| Sbjct 923 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCC 982 Query 833 AATGCTCTCCGTGACTATTTCCGTGATATTGGTCGTATGGTTCTCACTGCCGAGGGTCGT 892 |||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 983 AATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGC 1042 Query 893 TCTGTCCATGATTCATCTTCGGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGCACC 952 | |||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct 1043 AAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTA-- 1100 Query 953 CAGC--ACGGCCGTTTACATTTTCACGCAGTGCACCTTATGCGCACACTTCCTCTGGGTT 1010 |||| | |||||| | ||||| || || |||||| ||||||| ||||||||| ||| Sbjct 1101 CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTA 1160 Query 1011 CTATCGACCCTAACTTTGGCAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAA 1070 | |||||||| ||||| | ||| || | | || || ||||||||||||||| Sbjct 1161 GCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAA 1220 Query 1071 ATACATGGCCCTATGGTTACTCTATGCCCATCGCGGTCCGGTACTCCCAAGACGCATTTT 1130 |||| ||||| ||||||||| |||||||||||| || || ||| | || ||||| |||| Sbjct 1221 ATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTT 1280 Query 1131 CGCGCGCTGGCTGGCTCTGGCCCGTTGATACAAAGGGCGAACCTCTTAAAGCTACCTCGT 1190 | || |||| ||| | ||||| |||||| | || || || || |||||||||||| | Sbjct 1281 CACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTT 1340 Query 1191 ATATGGCTGTCGGCTTCTACGTCGCTAAATACGTTAACAAAAAATCAGATATTGACATGG 1250 |||||||||| || ||||| || |||||||||||||||||||| |||||||| ||| | | Sbjct 1341 ATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTG 1400 Query 1251 CCTCTAAAGGTCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAAATCAACCTGC 1310 | ||||||||||||| ||||||||||||||| ||||| |||||||| | || | Sbjct 1401 CTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTAC 1460 Query 1311 TGCCCAAGAAAATTTTTCGCATCAGGATGTCTCGCAACTTCGGAATGAAGCTGCACACAA 1370 | |||||||| | || | ||||| ||| ||||||||||| ||||| ||| ||||| Sbjct 1461 TTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAA 1520 Query 1371 TGAGTCACCTCTCAGCGGAAACTCTAATCCAACTGACCCAAGTGGGCTACGACGTGACCC 1430 ||| | || || |||| |||||||||| ||| | |||| ||||||| ||| | Sbjct 1521 TGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGC 1580 Query 1431 CGTTCAACAACATCTTGAAGCAGAACGCCAAGAAAGAG 1468 |||||||| | || |||||||||||||| || | |||| Sbjct 1581 CGTTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAG 1618 >seq35511 Length=1595 Score = 491 bits (544), Expect = 2e-135 Identities = 661/921 (72%), Gaps = 52/921 (6%) Strand=Plus/Plus Query 1831 CTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTCCGTTACGAAGAACATTTCGTACAT 1890 || |||||||| || | || ||||||||||||| | || || |||||| || ||| Sbjct 4 CTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCAT 63 Query 1891 GGTAAACAATCAATGCTTGACTTATTAAATGAACGTGGACTATTATCCACATCAA----- 1945 |||| | | || | ||||| | ||||| || |||||| || |||| || Sbjct 64 GGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCT 123 Query 1946 ---CAACCAACCCAAAAGGAAATACAAAATGA---ACTCTAACGAATCTGCTGTTGCCTT 1999 |||||| | || ||| || | | |||| | || ||| | || || Sbjct 124 GTTCAACCA--CTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTT 181 Query 2000 CGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGA 2059 | || ||| | || ||||| ||||||||||||||||| | || |||| | ||||| Sbjct 182 CCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGA 241 Query 2060 AGACGACTTCGATTTCTTAACCCGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGC 2119 ||| || |||||||| | || || || || |||||||| ||||||||||| ||||| Sbjct 242 AGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGC 301 Query 2120 TCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCGGATACCCTCGCTT 2179 ||| ||| ||||||| ||||| |||||||| |||||||||| |||||||||||||| Sbjct 302 TCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTT 361 Query 2180 TCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACAT 2239 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 362 TCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACAT 421 Query 2240 CCAGACAGCATGTCTTATTATGGAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTAT 2299 || || || ||||| || ||||||||||| || || || ||||| ||||| ||||| | Sbjct 422 TCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGT 481 Query 2300 TGACCAGCCAGTTAAGGCCGCTGAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAA 2359 || | || ||||| ||||||||| | ||||| |||||| ||||||||||||| ||||| Sbjct 482 CGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA 541 Query 2360 CACTGACCATGTTACACATGCAGAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGT 2419 ||||||| | |||| | |||||| ||||| ||| || |||||||||| ||||||| Sbjct 542 CACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGT 601 Query 2420 AATGTAATGGCTAAA---------------GGCTCTCG---TCGGCGTTC---GCCGTCC 2458 |||||||| ||||| ||| |||| | | ||| | ||||| Sbjct 602 GATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTG 661 Query 2459 CG-----CT----------CTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTC 2503 || || |||||| ||||| || |||||||| || || |||||| Sbjct 662 CGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTT 721 Query 2504 TAATCTTCTAGGGGCTTCGGCCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACT 2563 ||| || |||||||||||||||| || || |||||| | |||||||| |||||||| Sbjct 722 TAA--TTGCAGGGGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACT 778 Query 2564 TCCGCTGACCGCATTCCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGC 2623 ||| || || || || | |||||||| || || | |||| |||||| | || || Sbjct 779 GGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGT 838 Query 2624 CGTTTAAAAACTATCTCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATG 2683 ||| | | || || || ||||| ||| ||||||||||||| || || | || Sbjct 839 CGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCC 898 Query 2684 GTAGGCGCTATTCGCCTTTCT 2704 || |||||| | || |||||| Sbjct 899 GTTGGCGCTCTCCGTCTTTCT 919 Score = 226 bits (250), Expect = 1e-55 Identities = 414/596 (69%), Gaps = 18/596 (3%) Strand=Plus/Plus Query 2762 CCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAGCTGGCGTTAATGCC 2821 || |||||||| | |||||| || | | ||| | |||||||| | ||| ||||||||| Sbjct 977 CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCC 1036 Query 2822 ACTCCTCTCGCACCTGTTACTACTGCCTCTGGCTGGGATGCTTCTGCC---TATCTTGGC 2878 ||||||||| | |||||| ||| | ||| | || |||| | ||||||| Sbjct 1037 ACTCCTCTCCCGACTGTTAACACTAC---TGGTTATATTGACCATGCCGCTTTTCTTGGC 1093 Query 2879 ACTATTCCATCCTCAAACCTC-AAGGTTCCTAAATTCTTACATCAAGGATACCTTAATAT 2937 || ||| | ||| | ||| || | ||||| || ||| || || | ||||| Sbjct 1094 ACGATTA-ACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATAT 1152 Query 2938 TTACAACAACTACTTTAAGCCACCGTGGGATGC-TGACCTTACATACGCTAACCCATCTA 2996 || |||||||| ||||| | |||||| |||| ||||| ||| | |||||||| || Sbjct 1153 CTATAACAACTATTTTAAAGCGCCGTGG-ATGCCTGACCGTACCGAGGCTAACCC---TA 1208 Query 2997 ACATGCCTGAACAGGATTATAAATGG---GGCGTTCGTGTC-GCTAACTTAAAATCTATC 3052 | || | | || ||| || | || | ||| | || | || |||| | || Sbjct 1209 ATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATT 1267 Query 3053 TGGACCGCCCCCTTACCTCCTAACTCTAAAACATCAGAGACTATGACCACTGGCGCTACG 3112 ||||| || || | |||||| | || | || ||||| ||| | || Sbjct 1268 TGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACA 1327 Query 3113 TCTATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAACGT 3172 |||||||| |||||||| |||||||||||||||||||| ||||| || | ||||||||| Sbjct 1328 TCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGT 1387 Query 3173 GACTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAGGTCACACCTCCTAT 3232 || ||||||||| || || | ||| |||| || |||||| | ||||| ||| Sbjct 1388 GATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTAT 1447 Query 3233 GACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGCTATGAC 3292 |||| ||| ||||||||| | || | ||||||||| | | ||||| ||||||||||| Sbjct 1448 GACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGAT 1507 Query 3293 GTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGTCCAACAAAC 3348 || || || ||||||||| | || ||||| ||||| || ||||| || ||||| || Sbjct 1508 GTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGAC 1563 >seq38000 Length=1362 Score = 194 bits (214), Expect = 6e-46 Identities = 510/765 (67%), Gaps = 44/765 (6%) Strand=Plus/Minus Query 4181 GACCCTAAATATATTGCGTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACC 4240 |||||||||| | |||| || | |||||||||||| || | | | | ||| | || Sbjct 1344 GACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CC 1287 Query 4241 GCTATGCCTCCTGTCTATGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTAT 4300 | || ||| |||||||| ||| ||| | | |||| | |||| | ||| | |||| Sbjct 1286 TC----CCGACTGCCTATGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTAT 1231 Query 4301 ACTGTTGAAGACTGCGCTACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTAT 4358 || || | ||||| | |||||| | | || | | | | | ||||| |||| | Sbjct 1230 ACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTT 1173 Query 4359 ATGTCGGCCTTATGCTTTTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTT 4418 |||| || | ||| ||| ||| | | ||| | | ||| ||| | | || Sbjct 1172 ATGTTGGTTTCATGGTTTGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTT 1116 Query 4419 CCCTTAATCAGGTAAACAAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTC 4477 | || |||||||| | || || | | |||||| || ||||| | |||| ||| Sbjct 1115 CGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT--- 1059 Query 4478 TATGTTTGGTGCAATCGCTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAA 4537 |||||||||||| || ||||||||||| || || |||||||||| || ||| || Sbjct 1058 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 999 Query 4538 AGCCTTTGGGGGCGGTCAATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC 4597 | ||||| ||||||||| ||| |||| |||| ||||||||||||| || ||| | Sbjct 998 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 939 Query 4598 ---TGACAATAACGTA---ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGG 4651 | |||||| ||| || || |||||||||||| ||||| || |||||||| Sbjct 938 CGATAACAATACTGTAGGCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGG 885 Query 4652 CTCTAATCCACCCAATGGCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGA 4711 ||||||| || || | | || | || | | | |||| || | | | ||| | Sbjct 884 CTCTAATGTTCCTAACCCTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCTAA 825 Query 4712 CACTGGCAAA-GACGCCCT--ATCTTCAAT-CA--CTGGC---GCTGGCGT---TAATAA 4759 |||| ||| ||| | | | | | | || ||||| ||| ||| | |||| Sbjct 824 AGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAA 765 Query 4760 ACTTATGGAAAAAATCGGACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAA 4816 | | || | ||||| | || |||| ||||||||||| ||||| || Sbjct 764 GTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCG 705 Query 4817 GGATTATCTTGCTTCTGCATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGC 4876 |||||||||||| ||||||| || || || || | ||||| |||||||| |||| ||| Sbjct 704 TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGC 645 Query 4877 TTCGTCTGCTGGCATGGTTGACGCTGGCTTCCAAAACCAAAAAGA 4921 ||| |||||||| ||||||||||| || || | || |||||||| Sbjct 644 TTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGA 600 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 508 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 449 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 448 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 389 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 388 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 329 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 328 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17431726190100