Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20curassoni_20[genbank_20GCA_5F000951415.1_202014-09-25] 60,140 sequences; 344,202,215 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq35511 423 7e-115 seq35230 178 5e-41 seq38000 174 6e-40 seq45717 159 1e-35 >seq35511 Length=1595 Score = 423 bits (468), Expect = 7e-115 Identities = 524/714 (73%), Gaps = 51/714 (7%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 211 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 270 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 271 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 330 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 331 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 390 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 391 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 450 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 451 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 510 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 511 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 570 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970 | | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| |||| Sbjct 571 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 629 Query 2971 ----CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTG 2995 || || ||| ||||| |||||||| | Sbjct 630 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 689 Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGC--TCTTT 3053 | || |||||||||||||| ||| || |||||||| | |||||| | | || Sbjct 690 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 749 Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112 |||| ||||| ||||||||| | |||||| ||| || ||| ||||||||| Sbjct 750 GAGGATAAATT--ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 807 Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170 ||||||| ||| | ||| | || |||||||||| | | || ||||| ||||| Sbjct 808 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 865 Query 3171 GTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCT 3224 ||||| |||||||| ||||| ||| | || || ||||||||| | ||||||||| Sbjct 866 GTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCT 919 Score = 383 bits (424), Expect = 6e-103 Identities = 459/621 (74%), Gaps = 8/621 (1%) Strand=Plus/Plus Query 3282 CCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCC 3341 || ||||| || ||||||||||| ||||||||| | || ||| ||||||||| ||||| Sbjct 977 CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCC 1036 Query 3342 GCACCACTCCCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTACT 3401 | || ||||| | |||| |||||| ||| || | || | || | |||| || Sbjct 1037 ACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACG 1096 Query 3402 ATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTAT 3461 ||| ||| | | ||| || |||||| |||| |||| |||| ||||||| ||| Sbjct 1097 ATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTAT 1156 Query 3462 AATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT--- 3518 || |||||||| ||||||||||||||||| ||||| || ||||| ||| ||| Sbjct 1157 AACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAG 1213 Query 3519 -TTAGACCGTGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTC 3577 ||| | | |||||| |||| ||||| ||||||||||||||||| |||| |||||| | Sbjct 1214 CTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGAC 1272 Query 3578 TGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCAT 3637 |||||| |||||||| || ||| |||| || |||||| | | | || || || Sbjct 1273 TGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTAT 1332 Query 3638 TGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTA 3697 ||| ||||||||| |||| || |||||||| | | |||||||| || || ||| ||| Sbjct 1333 TGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTA 1392 Query 3698 TTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGC 3757 |||||||||||||| | ||||||||| || ||||| ||| |||||| ||||| || Sbjct 1393 CTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGC 1452 Query 3758 CGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGA 3817 || ||||| || || ||||| |||| | | || ||||||| || || || || ||||| Sbjct 1453 TGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGA 1512 Query 3818 CGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACA 3877 || || |||||| | || | || |||||||| ||||| || |||||||| | |||||| Sbjct 1513 TGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACA 1572 Query 3878 CTCAGTGCCTCGATTCTTCGT 3898 || ||||| || ||||| || Sbjct 1573 TTCTGTGCCGCGTTTCTTTGT 1593 >seq35230 Length=1623 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 914 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 973 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 974 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1033 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1034 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1093 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1094 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1151 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1152 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1210 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 1211 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1270 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 1271 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1308 >seq38000 Length=1362 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 719 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 660 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 659 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 605 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 604 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 546 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 545 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 487 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 486 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 427 Query 5762 CGTCCAT 5768 |||| || Sbjct 426 CGTCTAT 420 >seq45717 Length=879 Score = 159 bits (176), Expect = 1e-35 Identities = 352/524 (67%), Gaps = 14/524 (3%) Strand=Plus/Minus Query 3840 GGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTG 3899 || |||||||| ||||| || |||||||| | |||||| || ||||| || ||||| || Sbjct 876 GGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTT 817 Query 3900 CCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTG 3959 || |||||||| ||| | ||| | ||| ||||| || ||||||| || Sbjct 816 CCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA 757 Query 3960 GAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCCG 4019 ||| ||| || ||| | | | ||||||||||||||| |||| || ||||| Sbjct 756 GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCT 697 Query 4020 GCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGGT 4079 | |||| ||| || |||||||| ||||| |||||| ||||| |||||||| |||| Sbjct 696 GTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGT 637 Query 4080 CGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTAT 4139 | || | ||| ||||| |||| ||| | ||||||||| | || ||| Sbjct 636 GATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTAT 577 Query 4140 GTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTAC 4198 ||| || | ||||| | |||||||| || || ||| || | || ||| Sbjct 576 GTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC------- 525 Query 4199 GACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTG 4258 || ||||||| | |||| || | || ||| ||| |||| ||| | || Sbjct 524 --CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTG 470 Query 4259 TTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTTA 4318 ||||||||| |||||| | |||||||||| ||||| | | |||||| | ||||| Sbjct 469 TTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTA 410 Query 4319 TCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 ||| || | || || ||| ||||| || ||||| || |||| Sbjct 409 TCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19372484187680