Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_014927.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
seq55868 100 3e-18
seq192907 91.5 2e-15
seq16718 87.8 2e-14
seq251874 82.4 9e-13
seq32853 80.6 3e-12
>seq55868
Length=5588
Score = 100 bits (110), Expect = 3e-18
Identities = 149/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 736 CTACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGA 795
||| |||| |||| | |||||||| ||||| | || || | ||||| ||||
Sbjct 1773 CTATAAACAAAGAGACAAATGGTGGGACGGATATGAATACCAAGACAACATCATCATCGA 1714
Query 796 TGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTA 855
|||||| |||||||||||| | | |||||| | ||||| ||||| ||||| || || ||
Sbjct 1713 TGACTTTTACGGATGGATACCACATGACGAACTTCTTAAAATATGTGATCGATACCCCTA 1654
Query 856 TCGCGTACCAGTCAAAGGTGG-ATACGAGAATTTTATTGCGaaaaaaaTATGGTTTACGT 914
||| || || ||||||| || | ||| || ||| | | | | || ||| |||| |
Sbjct 1653 TCGAGTGCCTATCAAAGGAGGCTTTCGA-AAGTTTGTGTCTAGACGGATCTGGATTACCT 1595
Query 915 CAAACAAACCACTTGAACAAATATACAAA 943
| || | ||| | |||||| ||||||||
Sbjct 1594 CCAATATCCCAATAGAACAATTATACAAA 1566
>seq192907
Length=1861
Score = 91.5 bits (100), Expect = 2e-15
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 736 CTACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGA 795
||| |||| ||| | | |||||||| |||||| | || | |||||| ||||
Sbjct 1007 CTATAAACAACGAGAAAAATGGTGGGACGGATACGAATACCAACCAAATGTCATCATCGA 1066
Query 796 TGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTA 855
|| |||||||||||||| ||| ||||| | || || ||||||||| | ||||||||
Sbjct 1067 CGATTTCTACGGATGGATCGCATATGACGAGCTTCTCAAAATATGCGATAGATATCCTTA 1126
Query 856 TCGCGTACCAGTCAAAGGTGGAT 878
|||||||| ||||||| ||||
Sbjct 1127 CCGCGTACCCATCAAAGGAGGAT 1149
>seq16718
Length=10213
Score = 87.8 bits (96), Expect = 2e-14
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 736 CTACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGA 795
|||||||| |||| | | |||||||| |||||| | || | |||||| | ||
Sbjct 9233 CTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGA 9174
Query 796 TGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTA 855
||||||||||||||||| ||||||||| | ||||| |||| ||||| ||||| ||
Sbjct 9173 CGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATA 9114
Query 856 TCGCGTACCAGTCAAAGGTGGAT 878
| || || ||||||| ||||
Sbjct 9113 CAGAGTTCCCATCAAAGGAGGAT 9091
>seq251874
Length=1306
Score = 82.4 bits (90), Expect = 9e-13
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 784 CGTCATCTTCGATGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGA 843
||||||| | || ||||||||||||||||| |||||||| | ||||| ||||| ||
Sbjct 550 CGTCATCATTGACGACTTCTACGGATGGATCGCCTACGACGAGCTTCTTAAAATATGTGA 609
Query 844 TCGTTATCCTTATCGCGTACCAGTCAAAGGTGGATACGAGAATTTTATTGCGaaaaaaaT 903
| | ||||| || | || || ||||||| |||| || ||| || | || | |||
Sbjct 610 TAGATATCCATACAGAGTGCCCATCAAAGGCGGATTTAGAAAATTTGTTTCAAAGAGAAT 669
Query 904 ATGGTTTACGTCAAA 918
|||| |||| || ||
Sbjct 670 ATGGATTACATCCAA 684
>seq32853
Length=7534
Score = 80.6 bits (88), Expect = 3e-12
Identities = 91/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 755 TGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGATGACTTCTACGGATGGATA 814
||||||||||| ||| | || || || ||| |||||||||| ||||||||||||
Sbjct 6500 TGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTACGGATGGATA 6441
Query 815 AAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTATCGCGTACCAGTCAAAGGT 874
||| | |||| | ||||| ||||| ||||| || || ||||| || || | |||||
Sbjct 6440 CCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATTAAAGGA 6381
Query 875 GG 876
||
Sbjct 6380 GG 6379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5743211758944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |