Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_014927.1 Length=1838 Score E Sequences producing significant alignments: (Bits) Value seq55868 100 3e-18 seq192907 91.5 2e-15 seq16718 87.8 2e-14 seq251874 82.4 9e-13 seq32853 80.6 3e-12 >seq55868 Length=5588 Score = 100 bits (110), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 736 CTACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGA 795 ||| |||| |||| | |||||||| ||||| | || || | ||||| |||| Sbjct 1773 CTATAAACAAAGAGACAAATGGTGGGACGGATATGAATACCAAGACAACATCATCATCGA 1714 Query 796 TGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTA 855 |||||| |||||||||||| | | |||||| | ||||| ||||| ||||| || || || Sbjct 1713 TGACTTTTACGGATGGATACCACATGACGAACTTCTTAAAATATGTGATCGATACCCCTA 1654 Query 856 TCGCGTACCAGTCAAAGGTGG-ATACGAGAATTTTATTGCGaaaaaaaTATGGTTTACGT 914 ||| || || ||||||| || | ||| || ||| | | | | || ||| |||| | Sbjct 1653 TCGAGTGCCTATCAAAGGAGGCTTTCGA-AAGTTTGTGTCTAGACGGATCTGGATTACCT 1595 Query 915 CAAACAAACCACTTGAACAAATATACAAA 943 | || | ||| | |||||| |||||||| Sbjct 1594 CCAATATCCCAATAGAACAATTATACAAA 1566 >seq192907 Length=1861 Score = 91.5 bits (100), Expect = 2e-15 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 736 CTACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGA 795 ||| |||| ||| | | |||||||| |||||| | || | |||||| |||| Sbjct 1007 CTATAAACAACGAGAAAAATGGTGGGACGGATACGAATACCAACCAAATGTCATCATCGA 1066 Query 796 TGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTA 855 || |||||||||||||| ||| ||||| | || || ||||||||| | |||||||| Sbjct 1067 CGATTTCTACGGATGGATCGCATATGACGAGCTTCTCAAAATATGCGATAGATATCCTTA 1126 Query 856 TCGCGTACCAGTCAAAGGTGGAT 878 |||||||| ||||||| |||| Sbjct 1127 CCGCGTACCCATCAAAGGAGGAT 1149 >seq16718 Length=10213 Score = 87.8 bits (96), Expect = 2e-14 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 736 CTACAAACCTAGAGGAGACTGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGA 795 |||||||| |||| | | |||||||| |||||| | || | |||||| | || Sbjct 9233 CTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGA 9174 Query 796 TGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTA 855 ||||||||||||||||| ||||||||| | ||||| |||| ||||| ||||| || Sbjct 9173 CGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATA 9114 Query 856 TCGCGTACCAGTCAAAGGTGGAT 878 | || || ||||||| |||| Sbjct 9113 CAGAGTTCCCATCAAAGGAGGAT 9091 >seq251874 Length=1306 Score = 82.4 bits (90), Expect = 9e-13 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 784 CGTCATCTTCGATGACTTCTACGGATGGATAAAATACGACGAAGTACTTAAGATATGCGA 843 ||||||| | || ||||||||||||||||| |||||||| | ||||| ||||| || Sbjct 550 CGTCATCATTGACGACTTCTACGGATGGATCGCCTACGACGAGCTTCTTAAAATATGTGA 609 Query 844 TCGTTATCCTTATCGCGTACCAGTCAAAGGTGGATACGAGAATTTTATTGCGaaaaaaaT 903 | | ||||| || | || || ||||||| |||| || ||| || | || | ||| Sbjct 610 TAGATATCCATACAGAGTGCCCATCAAAGGCGGATTTAGAAAATTTGTTTCAAAGAGAAT 669 Query 904 ATGGTTTACGTCAAA 918 |||| |||| || || Sbjct 670 ATGGATTACATCCAA 684 >seq32853 Length=7534 Score = 80.6 bits (88), Expect = 3e-12 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 755 TGGTGGGATGGATACAACGGACATGAATGCGTCATCTTCGATGACTTCTACGGATGGATA 814 ||||||||||| ||| | || || || ||| |||||||||| |||||||||||| Sbjct 6500 TGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTACGGATGGATA 6441 Query 815 AAATACGACGAAGTACTTAAGATATGCGATCGTTATCCTTATCGCGTACCAGTCAAAGGT 874 ||| | |||| | ||||| ||||| ||||| || || ||||| || || | ||||| Sbjct 6440 CCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATTAAAGGA 6381 Query 875 GG 876 || Sbjct 6380 GG 6379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5743211758944