Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_014928.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
seq251874 102 9e-19
seq32853 98.7 1e-17
seq16718 80.6 3e-12
>seq251874
Length=1306
Score = 102 bits (112), Expect = 9e-19
Identities = 200/291 (69%), Gaps = 5/291 (2%)
Strand=Plus/Plus
Query 463 CGCGATTTCAAGACTGAGGTTTTTTATTACTGGGGGCCGCCAGGATCTGGGAAA-TCTAG 521
||| ||||||| |||||||| | ||| || | || | || || | | ||||| ||| |
Sbjct 401 CGCTATTTCAAAACTGAGGTATATTACTATTACGGCCAACCGGG-TGTAGGAAAGTCTCG 459
Query 522 AAGAGCGCTTGAGGAAGCGAGGCAACTTGACGGAGAATCCATATACTACAAACCCCGAGG 581
| |||| || || ||||| | || | ||| ||| | || | || |||| |||||
Sbjct 460 ACGAGCCCTCGAAGAAGCTT--CTGCT-GTCGGTGAACCTATCTTTTATAAACAACGAGG 516
Query 582 ATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTATAATAGACGACTTCTATGGATG 641
| |||||||| || ||||| || | || ||| || || ||||||||||| |||||
Sbjct 517 ACCTTGGTGGGACGGATATGACTTCCAACCCAACGTCATCATTGACGACTTCTACGGATG 576
Query 642 GATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTACCCATACAAGGTACAAATAAA 701
||| |||||||| | || |||||| || | || ||||||| || | || ||
Sbjct 577 GATCGCCTACGACGAGCTTCTTAAAATATGTGATAGATATCCATACAGAGTGCCCATCAA 636
Query 702 AGGAGGATTTCAAGAATTCACATCAGAAAAAATTTTTATTACTTCAAATGT 752
||| |||||| | |||| ||| | | ||| | ||||| || |||||
Sbjct 637 AGGCGGATTTAGAAAATTTGTTTCAAAGAGAATATGGATTACATCCAATGT 687
>seq32853
Length=7534
Score = 98.7 bits (108), Expect = 1e-17
Identities = 172/247 (70%), Gaps = 5/247 (2%)
Strand=Plus/Minus
Query 467 ATTTCAAGACTGAGGTTTTTTATTACTGGGGGCCGCCAGGATCTGGGAAA-TCTAGAAGA 525
||||||| || ||||| || |||| ||| | ||||| | | ||||| || ||||||
Sbjct 6616 ATTTCAAAACAGAGGTATTCCATTATCATGGGGCACCAGG-TGTAGGAAAGTCAAGAAGA 6558
Query 526 GCGCTTGAGGAAGCGAGGCAACTTGACGGAGAATCCATATACTACAAACCCCGAGGATTA 585
|| || || ||||| | | || ||| | |||||| | ||| || | ||||
Sbjct 6557 GCCCTGGAAGAAGCTACTAA---TGTCGGTGGATCCATTTTCTATAAGCAACGAGACAAG 6501
Query 586 TGGTGGGATGGCTATGAACAACAGCGCAGCGTTATAATAGACGACTTCTATGGATGGATA 645
|||||||||||||| ||| | ||| || ||||| || || ||||| || |||||||||
Sbjct 6500 TGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTACGGATGGATA 6441
Query 646 AAGTACGACGAAATGCTGAAAATAATGGACCGCTACCCATACAAGGTACAAATAAAAGGA 705
|| | |||| | || |||||| || || ||||| || || | || ||||||
Sbjct 6440 CCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATTAAAGGA 6381
Query 706 GGATTTC 712
|| ||||
Sbjct 6380 GGCTTTC 6374
>seq16718
Length=10213
Score = 80.6 bits (88), Expect = 3e-12
Identities = 109/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 560 CCATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTA 619
|||| | |||||||| ||| | |||||||| || || ||| | || | | ||| |
Sbjct 9240 CCATTTTCTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTCA 9181
Query 620 TAATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCT 679
| || ||||||||||| |||||||| |||||||| | || ||| || || || |
Sbjct 9180 TTATTGACGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGAT 9121
Query 680 ACCCATACAAGGTACAAATAAAAGGAGGATTT 711
| ||||||| || | || ||||||||||||
Sbjct 9120 ATCCATACAGAGTTCCCATCAAAGGAGGATTT 9089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5466238686312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |