Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_014928.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value seq251874 102 9e-19 seq32853 98.7 1e-17 seq16718 80.6 3e-12 >seq251874 Length=1306 Score = 102 bits (112), Expect = 9e-19 Identities = 200/291 (69%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 463 CGCGATTTCAAGACTGAGGTTTTTTATTACTGGGGGCCGCCAGGATCTGGGAAA-TCTAG 521 ||| ||||||| |||||||| | ||| || | || | || || | | ||||| ||| | Sbjct 401 CGCTATTTCAAAACTGAGGTATATTACTATTACGGCCAACCGGG-TGTAGGAAAGTCTCG 459 Query 522 AAGAGCGCTTGAGGAAGCGAGGCAACTTGACGGAGAATCCATATACTACAAACCCCGAGG 581 | |||| || || ||||| | || | ||| ||| | || | || |||| ||||| Sbjct 460 ACGAGCCCTCGAAGAAGCTT--CTGCT-GTCGGTGAACCTATCTTTTATAAACAACGAGG 516 Query 582 ATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTATAATAGACGACTTCTATGGATG 641 | |||||||| || ||||| || | || ||| || || ||||||||||| ||||| Sbjct 517 ACCTTGGTGGGACGGATATGACTTCCAACCCAACGTCATCATTGACGACTTCTACGGATG 576 Query 642 GATAAAGTACGACGAAATGCTGAAAATAATGGACCGCTACCCATACAAGGTACAAATAAA 701 ||| |||||||| | || |||||| || | || ||||||| || | || || Sbjct 577 GATCGCCTACGACGAGCTTCTTAAAATATGTGATAGATATCCATACAGAGTGCCCATCAA 636 Query 702 AGGAGGATTTCAAGAATTCACATCAGAAAAAATTTTTATTACTTCAAATGT 752 ||| |||||| | |||| ||| | | ||| | ||||| || ||||| Sbjct 637 AGGCGGATTTAGAAAATTTGTTTCAAAGAGAATATGGATTACATCCAATGT 687 >seq32853 Length=7534 Score = 98.7 bits (108), Expect = 1e-17 Identities = 172/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 467 ATTTCAAGACTGAGGTTTTTTATTACTGGGGGCCGCCAGGATCTGGGAAA-TCTAGAAGA 525 ||||||| || ||||| || |||| ||| | ||||| | | ||||| || |||||| Sbjct 6616 ATTTCAAAACAGAGGTATTCCATTATCATGGGGCACCAGG-TGTAGGAAAGTCAAGAAGA 6558 Query 526 GCGCTTGAGGAAGCGAGGCAACTTGACGGAGAATCCATATACTACAAACCCCGAGGATTA 585 || || || ||||| | | || ||| | |||||| | ||| || | |||| Sbjct 6557 GCCCTGGAAGAAGCTACTAA---TGTCGGTGGATCCATTTTCTATAAGCAACGAGACAAG 6501 Query 586 TGGTGGGATGGCTATGAACAACAGCGCAGCGTTATAATAGACGACTTCTATGGATGGATA 645 |||||||||||||| ||| | ||| || ||||| || || ||||| || ||||||||| Sbjct 6500 TGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTACGGATGGATA 6441 Query 646 AAGTACGACGAAATGCTGAAAATAATGGACCGCTACCCATACAAGGTACAAATAAAAGGA 705 || | |||| | || |||||| || || ||||| || || | || |||||| Sbjct 6440 CCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATTAAAGGA 6381 Query 706 GGATTTC 712 || |||| Sbjct 6380 GGCTTTC 6374 >seq16718 Length=10213 Score = 80.6 bits (88), Expect = 3e-12 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 560 CCATATACTACAAACCCCGAGGATTATGGTGGGATGGCTATGAACAACAGCGCAGCGTTA 619 |||| | |||||||| ||| | |||||||| || || ||| | || | | ||| | Sbjct 9240 CCATTTTCTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTCA 9181 Query 620 TAATAGACGACTTCTATGGATGGATAAAGTACGACGAAATGCTGAAAATAATGGACCGCT 679 | || ||||||||||| |||||||| |||||||| | || ||| || || || | Sbjct 9180 TTATTGACGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGAT 9121 Query 680 ACCCATACAAGGTACAAATAAAAGGAGGATTT 711 | ||||||| || | || |||||||||||| Sbjct 9120 ATCCATACAGAGTTCCCATCAAAGGAGGATTT 9089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5466238686312