Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_014929.1 Length=1703 Score E Sequences producing significant alignments: (Bits) Value seq251874 102 9e-19 seq192907 96.9 4e-17 seq16718 95.1 1e-16 seq55868 93.3 4e-16 seq32853 78.8 1e-11 >seq251874 Length=1306 Score = 102 bits (112), Expect = 9e-19 Identities = 167/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 472 AAAACATGGGTCTACTACTACTGGGGACCACCAGGCACGGGAAAATCACGACGAGCTCTG 531 ||||| ||| || ||||| | || | ||| || ||||| || |||||||| || Sbjct 410 AAAACTGAGGTATATTACTATTACGGCCAACCGGGTGTAGGAAAGTCTCGACGAGCCCTC 469 Query 532 GAAGAAGCATCCCAAATCAACAGCAATAGTATATACTACAAACCACGTGGACTCTGGTGG 591 |||||||| || || | | ||| | || |||| ||| |||| |||||| Sbjct 470 GAAGAAGCTTCTGCTGTCG---GTGAACCTATCTTTTATAAACAACGAGGACCTTGGTGG 526 Query 592 GACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATAAAGTAC 651 ||||| ||| | ||| || |||||||| ||||| |||||||||||||| ||| Sbjct 527 GACGGATATGACTTCCAACCCAACGTCATCATTGACGACTTCTACGGATGGATCGCCTAC 586 Query 652 GACGAACTCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAAAGGAGGATTT 711 ||||| || || |||||| ||| | || ||||| | ||| | |||||||| |||||| Sbjct 587 GACGAGCTTCTTAAAATATGTGATAGATATCCATACAGAGTGCCCATCAAAGGCGGATTT 646 >seq192907 Length=1861 Score = 96.9 bits (106), Expect = 4e-17 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 561 TATATACTACAAACCACGTGGACTCTGGTGGGACGGTTATCATCAACAAGAAAATGTCAT 620 ||| | ||| |||| ||| | | ||||||||||| || | | ||| ||||||||| Sbjct 1001 TATCTTCTATAAACAACGAGAAAAATGGTGGGACGGATACGAATACCAACCAAATGTCAT 1060 Query 621 CATAGACGATTTCTACGGATGGATAAAGTACGACGAACTCCTCAAAATAACTGACCGCTA 680 ||| |||||||||||||||||||| || ||||| || ||||||||| || | || Sbjct 1061 CATCGACGATTTCTACGGATGGATCGCATATGACGAGCTTCTCAAAATATGCGATAGATA 1120 Query 681 CCCATATAAAGTACAAATCAAAGGAGGATTT 711 || || |||| ||||||||||||||| Sbjct 1121 TCCTTACCGCGTACCCATCAAAGGAGGATTT 1151 >seq16718 Length=10213 Score = 95.1 bits (104), Expect = 1e-16 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 567 CTACAAACCACGTGGACTCTGGTGGGACGGTTATCATCAACAAGAAAATGTCATCATAGA 626 |||||||| | | | | ||||||||||| || | | ||| ||| ||||| || || Sbjct 9233 CTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGA 9174 Query 627 CGATTTCTACGGATGGATAAAGTACGACGAACTCCTCAAAATAACTGACCGCTACCCATA 686 ||| |||||||||||||| |||||||| || || ||| || ||| || || ||||| Sbjct 9173 CGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATA 9114 Query 687 TAAAGTACAAATCAAAGGAGGATTT 711 | ||| | ||||||||||||||| Sbjct 9113 CAGAGTTCCCATCAAAGGAGGATTT 9089 >seq55868 Length=5588 Score = 93.3 bits (102), Expect = 4e-16 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 586 TGGTGGGACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATA 645 ||||||||||| ||| | | ||||| || ||||||| || || || |||||||||||| Sbjct 1754 TGGTGGGACGGATATGAATACCAAGACAACATCATCATCGATGACTTTTACGGATGGATA 1695 Query 646 AAGTACGACGAACTCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAAAGGA 705 | |||||||| || |||||| ||| || ||||| ||| ||| | ||||||||| Sbjct 1694 CCACATGACGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATCAAAGGA 1635 Query 706 GGATTT 711 || ||| Sbjct 1634 GGCTTT 1629 >seq32853 Length=7534 Score = 78.8 bits (86), Expect = 1e-11 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 586 TGGTGGGACGGTTATCATCAACAAGAAAATGTCATCATAGACGATTTCTACGGATGGATA 645 |||||||| || || | | || || ||||| ||||| || || || |||||||||||| Sbjct 6500 TGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTACGGATGGATA 6441 Query 646 AAGTACGACGAACTCCTCAAAATAACTGACCGCTACCCATATAAAGTACAAATCAAAGGA 705 || | |||||| || |||||| ||| || ||||| ||| ||| | || |||||| Sbjct 6440 CCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATTAAAGGA 6381 Query 706 GGATTT 711 || ||| Sbjct 6380 GGCTTT 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5313425956584