Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_014930.1
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
seq192907 89.7 6e-15
seq16718 89.7 6e-15
seq251874 86.0 7e-14
seq32853 78.8 1e-11
>seq192907
Length=1861
Score = 89.7 bits (98), Expect = 6e-15
Identities = 112/153 (73%), Gaps = 8/153 (5%)
Strand=Plus/Plus
Query 562 ATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTA----TACAAACCAGAAATGTGT 617
|||| |||||||| ||||| ||| ||||||| || ||| ||||| | |||
Sbjct 1002 ATCTTCTATAAACAACGAGAAAAATGGTGGGACGGATACGAATACCAACCAAA----TGT 1057
Query 618 TATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCG 677
|| || ||||| |||||||||||||| ||| ||||| || || ||||| ||||| |
Sbjct 1058 CATCATCGACGATTTCTACGGATGGATCGCATATGACGAGCTTCTCAAAATATGCGATAG 1117
Query 678 TTATCCTTACAAAGTACAAATAAAAGGGGGATT 710
||||||||| |||| || ||||| |||||
Sbjct 1118 ATATCCTTACCGCGTACCCATCAAAGGAGGATT 1150
>seq16718
Length=10213
Score = 89.7 bits (98), Expect = 6e-15
Identities = 113/155 (73%), Gaps = 8/155 (5%)
Strand=Plus/Minus
Query 560 CCATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTA----TACAAACCAGAAATGT 615
|||| | ||| |||| | ||| |||| ||||||| || || ||||| |
Sbjct 9240 CCATTTTCTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAAC---- 9185
Query 616 GTTATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGAC 675
|| |||||||||||||||||||||||||| ||||||||| || || ||| | || ||
Sbjct 9184 GTCATTATTGACGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGAT 9125
Query 676 CGTTATCCTTACAAAGTACAAATAAAAGGGGGATT 710
|| ||||| |||| ||| | || ||||| |||||
Sbjct 9124 CGATATCCATACAGAGTTCCCATCAAAGGAGGATT 9090
>seq251874
Length=1306
Score = 86.0 bits (94), Expect = 7e-14
Identities = 111/153 (73%), Gaps = 8/153 (5%)
Strand=Plus/Plus
Query 562 ATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATA----CAAACCAGAAATGTGT 617
|||| ||||||| |||||| | ||| ||||||| ||| | |||| | ||
Sbjct 497 ATCTTTTATAAACAACGAGGACCTTGGTGGGACGGATATGACTTCCAACCCAAC----GT 552
Query 618 TATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCG 677
|| ||||||||||||||||||||||| |||||||| || || ||||| || || |
Sbjct 553 CATCATTGACGACTTCTACGGATGGATCGCCTACGACGAGCTTCTTAAAATATGTGATAG 612
Query 678 TTATCCTTACAAAGTACAAATAAAAGGGGGATT 710
||||| |||| ||| | || ||||| |||||
Sbjct 613 ATATCCATACAGAGTGCCCATCAAAGGCGGATT 645
>seq32853
Length=7534
Score = 78.8 bits (86), Expect = 1e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 502 CCAGGAACAGGTAAATCCAGAACTGCTTTGGAAGAAGCaaaaaaaaTTGATCCGACTTCC 561
||||| ||| || || |||| || |||||||||| | || | | | || |||
Sbjct 6581 CCAGGTGTAGGAAAGTCAAGAAGAGCCCTGGAAGAAGCTACTAATGTCGGTG-GA--TCC 6525
Query 562 ATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATACAAACCAGAAATGTGTTATT 621
|| | |||||| | ||||| |||| |||| ||||| | | ||| | ||||||
Sbjct 6524 ATTTTCTATAAGCAACGAGACAAGTGGTGGGATGGCTACGAATATCAGGACAATGTTATC 6465
Query 622 ATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCGTTAT 681
|| || ||||| |||||||||||| ||| | |||||| || ||||| || || || ||
Sbjct 6464 ATCGATGACTTTTACGGATGGATACCATATGGCGAACTTCTTAAAATATGTGATCGATAC 6405
Query 682 CCTTACAAAGTACAAATAAAAGG-GGGATTCGAA 714
|| || ||| | || ||||| || ||||||
Sbjct 6404 CCCTATCGAGTGCCTATTAAAGGAGGCTTTCGAA 6371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5494891073136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |