Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_014930.1 Length=1760 Score E Sequences producing significant alignments: (Bits) Value seq192907 89.7 6e-15 seq16718 89.7 6e-15 seq251874 86.0 7e-14 seq32853 78.8 1e-11 >seq192907 Length=1861 Score = 89.7 bits (98), Expect = 6e-15 Identities = 112/153 (73%), Gaps = 8/153 (5%) Strand=Plus/Plus Query 562 ATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTA----TACAAACCAGAAATGTGT 617 |||| |||||||| ||||| ||| ||||||| || ||| ||||| | ||| Sbjct 1002 ATCTTCTATAAACAACGAGAAAAATGGTGGGACGGATACGAATACCAACCAAA----TGT 1057 Query 618 TATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCG 677 || || ||||| |||||||||||||| ||| ||||| || || ||||| ||||| | Sbjct 1058 CATCATCGACGATTTCTACGGATGGATCGCATATGACGAGCTTCTCAAAATATGCGATAG 1117 Query 678 TTATCCTTACAAAGTACAAATAAAAGGGGGATT 710 ||||||||| |||| || ||||| ||||| Sbjct 1118 ATATCCTTACCGCGTACCCATCAAAGGAGGATT 1150 >seq16718 Length=10213 Score = 89.7 bits (98), Expect = 6e-15 Identities = 113/155 (73%), Gaps = 8/155 (5%) Strand=Plus/Minus Query 560 CCATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTA----TACAAACCAGAAATGT 615 |||| | ||| |||| | ||| |||| ||||||| || || ||||| | Sbjct 9240 CCATTTTCTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAAC---- 9185 Query 616 GTTATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGAC 675 || |||||||||||||||||||||||||| ||||||||| || || ||| | || || Sbjct 9184 GTCATTATTGACGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGAT 9125 Query 676 CGTTATCCTTACAAAGTACAAATAAAAGGGGGATT 710 || ||||| |||| ||| | || ||||| ||||| Sbjct 9124 CGATATCCATACAGAGTTCCCATCAAAGGAGGATT 9090 >seq251874 Length=1306 Score = 86.0 bits (94), Expect = 7e-14 Identities = 111/153 (73%), Gaps = 8/153 (5%) Strand=Plus/Plus Query 562 ATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATA----CAAACCAGAAATGTGT 617 |||| ||||||| |||||| | ||| ||||||| ||| | |||| | || Sbjct 497 ATCTTTTATAAACAACGAGGACCTTGGTGGGACGGATATGACTTCCAACCCAAC----GT 552 Query 618 TATTATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCG 677 || ||||||||||||||||||||||| |||||||| || || ||||| || || | Sbjct 553 CATCATTGACGACTTCTACGGATGGATCGCCTACGACGAGCTTCTTAAAATATGTGATAG 612 Query 678 TTATCCTTACAAAGTACAAATAAAAGGGGGATT 710 ||||| |||| ||| | || ||||| ||||| Sbjct 613 ATATCCATACAGAGTGCCCATCAAAGGCGGATT 645 >seq32853 Length=7534 Score = 78.8 bits (86), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 502 CCAGGAACAGGTAAATCCAGAACTGCTTTGGAAGAAGCaaaaaaaaTTGATCCGACTTCC 561 ||||| ||| || || |||| || |||||||||| | || | | | || ||| Sbjct 6581 CCAGGTGTAGGAAAGTCAAGAAGAGCCCTGGAAGAAGCTACTAATGTCGGTG-GA--TCC 6525 Query 562 ATCTACTATAAACCACGAGGTCTGTGGGGGGACGGCTATACAAACCAGAAATGTGTTATT 621 || | |||||| | ||||| |||| |||| ||||| | | ||| | |||||| Sbjct 6524 ATTTTCTATAAGCAACGAGACAAGTGGTGGGATGGCTACGAATATCAGGACAATGTTATC 6465 Query 622 ATTGACGACTTCTACGGATGGATAAAATACGACGAACTACTGAAAATTTGCGACCGTTAT 681 || || ||||| |||||||||||| ||| | |||||| || ||||| || || || || Sbjct 6464 ATCGATGACTTTTACGGATGGATACCATATGGCGAACTTCTTAAAATATGTGATCGATAC 6405 Query 682 CCTTACAAAGTACAAATAAAAGG-GGGATTCGAA 714 || || ||| | || ||||| || |||||| Sbjct 6404 CCCTATCGAGTGCCTATTAAAGGAGGCTTTCGAA 6371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5494891073136