Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_020206.1 Length=1719 Score E Sequences producing significant alignments: (Bits) Value seq251874 109 6e-21 seq16718 109 6e-21 seq192907 100 3e-18 seq55868 98.7 1e-17 seq32853 80.6 3e-12 >seq251874 Length=1306 Score = 109 bits (120), Expect = 6e-21 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 953 ACGTTGCTTGTAATCCATATTCTCCTACTTGTAAATTCCTCGTATCCCCCTTTTACTGGT 1012 || ||| |||||||||||||||| | ||||| |||| ||||| | || Sbjct 687 ACATTGGATGTAATCCATATTCTCTTTGAAACAAATTTTCTAAATCCGCCTTTGATGGGC 628 Query 1013 ACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTTATCCATCCGTAG 1072 ||| ||||||| |||| || |||||||| || || ||||| | |||||||||||| Sbjct 627 ACTCTGTATGGATATCTATCACATATTTTAAGAAGCTCGTCGTAGGCGATCCATCCGTAG 568 Query 1073 AAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCACCATTCTCCGCGTGGT 1132 |||||||| || ||||||||| ||| || |||||||||||||| ||| ||| || Sbjct 567 AAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTCCCACCAAGGTCCTCGTTGT 508 Query 1133 TTGTA 1137 || || Sbjct 507 TTATA 503 >seq16718 Length=10213 Score = 109 bits (120), Expect = 6e-21 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 996 ATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCC 1055 |||| ||||| | || ||| ||||||| ||||| || |||| ||| || || ||||| Sbjct 9091 ATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCGT 9150 Query 1056 ATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCC 1115 || |||||||||||||||||||| || |||||||| ||| | | ||||||||||| Sbjct 9151 ATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCCC 9210 Query 1116 ACCATTCTCCGCGTGGTTTGTAG 1138 |||| | | | | | |||||||| Sbjct 9211 ACCACTTTTCTCTTTGTTTGTAG 9233 >seq192907 Length=1861 Score = 100 bits (110), Expect = 3e-18 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 996 ATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCC 1055 |||| ||||| | ||||| ||| || |||| ||||||||||| || || ||||| Sbjct 1149 ATCCTCCTTTGATGGGTACGCGGTAAGGATATCTATCGCATATTTTGAGAAGCTCGTCAT 1090 Query 1056 ATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCC 1115 || |||||||||||||| ||||| || ||||| || ||| | | ||||||||||| Sbjct 1089 ATGCGATCCATCCGTAGAAATCGTCGATGATGACATTTGGTTGGTATTCGTATCCGTCCC 1030 Query 1116 ACCATTCTCCGCGTGGTTTGTAG 1138 |||||| | | ||| |||| ||| Sbjct 1029 ACCATTTTTCTCGTTGTTTATAG 1007 >seq55868 Length=5588 Score = 98.7 bits (108), Expect = 1e-17 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 998 CCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCAT 1057 || ||||| | || ||| || |||||||| || |||||||| || |||||||| | Sbjct 1633 CCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGTCATGT 1692 Query 1058 TTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCAC 1117 |||||||||||| ||||| || || |||| ||||||||| | | |||||||||||| Sbjct 1693 GGTATCCATCCGTAAAAGTCATCGATGATGATGTTGTCTTGGTATTCATATCCGTCCCAC 1752 Query 1118 CATT 1121 |||| Sbjct 1753 CATT 1756 >seq32853 Length=7534 Score = 80.6 bits (88), Expect = 3e-12 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 998 CCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCAT 1057 || ||||| | || ||| || |||||||| || |||||||| || |||||| | || Sbjct 6379 CCTCCTTTAATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGCCATAT 6438 Query 1058 TTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCAC 1117 |||||||||||| ||||| || || || || ||||| || | | ||| || |||||| Sbjct 6439 GGTATCCATCCGTAAAAGTCATCGATGATAACATTGTCCTGATATTCGTAGCCATCCCAC 6498 Query 1118 CA 1119 || Sbjct 6499 CA 6500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5364363533160