Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_020206.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
seq251874 109 6e-21
seq16718 109 6e-21
seq192907 100 3e-18
seq55868 98.7 1e-17
seq32853 80.6 3e-12
>seq251874
Length=1306
Score = 109 bits (120), Expect = 6e-21
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 953 ACGTTGCTTGTAATCCATATTCTCCTACTTGTAAATTCCTCGTATCCCCCTTTTACTGGT 1012
|| ||| |||||||||||||||| | ||||| |||| ||||| | ||
Sbjct 687 ACATTGGATGTAATCCATATTCTCTTTGAAACAAATTTTCTAAATCCGCCTTTGATGGGC 628
Query 1013 ACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCATTTTATCCATCCGTAG 1072
||| ||||||| |||| || |||||||| || || ||||| | ||||||||||||
Sbjct 627 ACTCTGTATGGATATCTATCACATATTTTAAGAAGCTCGTCGTAGGCGATCCATCCGTAG 568
Query 1073 AAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCACCATTCTCCGCGTGGT 1132
|||||||| || ||||||||| ||| || |||||||||||||| ||| ||| ||
Sbjct 567 AAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTCCCACCAAGGTCCTCGTTGT 508
Query 1133 TTGTA 1137
|| ||
Sbjct 507 TTATA 503
>seq16718
Length=10213
Score = 109 bits (120), Expect = 6e-21
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 996 ATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCC 1055
|||| ||||| | || ||| ||||||| ||||| || |||| ||| || || |||||
Sbjct 9091 ATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCGT 9150
Query 1056 ATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCC 1115
|| |||||||||||||||||||| || |||||||| ||| | | |||||||||||
Sbjct 9151 ATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCCC 9210
Query 1116 ACCATTCTCCGCGTGGTTTGTAG 1138
|||| | | | | | ||||||||
Sbjct 9211 ACCACTTTTCTCTTTGTTTGTAG 9233
>seq192907
Length=1861
Score = 100 bits (110), Expect = 3e-18
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 996 ATCCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCC 1055
|||| ||||| | ||||| ||| || |||| ||||||||||| || || |||||
Sbjct 1149 ATCCTCCTTTGATGGGTACGCGGTAAGGATATCTATCGCATATTTTGAGAAGCTCGTCAT 1090
Query 1056 ATTTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCC 1115
|| |||||||||||||| ||||| || ||||| || ||| | | |||||||||||
Sbjct 1089 ATGCGATCCATCCGTAGAAATCGTCGATGATGACATTTGGTTGGTATTCGTATCCGTCCC 1030
Query 1116 ACCATTCTCCGCGTGGTTTGTAG 1138
|||||| | | ||| |||| |||
Sbjct 1029 ACCATTTTTCTCGTTGTTTATAG 1007
>seq55868
Length=5588
Score = 98.7 bits (108), Expect = 1e-17
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 998 CCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCAT 1057
|| ||||| | || ||| || |||||||| || |||||||| || |||||||| |
Sbjct 1633 CCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGTCATGT 1692
Query 1058 TTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCAC 1117
|||||||||||| ||||| || || |||| ||||||||| | | ||||||||||||
Sbjct 1693 GGTATCCATCCGTAAAAGTCATCGATGATGATGTTGTCTTGGTATTCATATCCGTCCCAC 1752
Query 1118 CATT 1121
||||
Sbjct 1753 CATT 1756
>seq32853
Length=7534
Score = 80.6 bits (88), Expect = 3e-12
Identities = 91/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 998 CCCCCTTTTACTGGTACTTTGTATGGGTATCGGTCGCATATTTTTAGTAGTTCGTCCCAT 1057
|| ||||| | || ||| || |||||||| || |||||||| || |||||| | ||
Sbjct 6379 CCTCCTTTAATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGCCATAT 6438
Query 1058 TTTATCCATCCGTAGAAGTCGTCTATTATGACGTTGTCTTGTTGGTGGTATCCGTCCCAC 1117
|||||||||||| ||||| || || || || ||||| || | | ||| || ||||||
Sbjct 6439 GGTATCCATCCGTAAAAGTCATCGATGATAACATTGTCCTGATATTCGTAGCCATCCCAC 6498
Query 1118 CA 1119
||
Sbjct 6499 CA 6500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5364363533160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |