Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_021568.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value seq192907 125 8e-26 seq55868 107 2e-20 seq16718 98.7 1e-17 seq32853 91.5 2e-15 >seq192907 Length=1861 Score = 125 bits (138), Expect = 8e-26 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 717 TACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGT 776 || || ||| |||| | ||| | |||||||||| |||||| ||||| ||||| | Sbjct 1001 TATCTTCTATAAACAACGAGAAAAATGGTGGGACGGATACGAATACCAACCAAATGTCAT 1060 Query 777 CATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATA 836 ||||||||| || || |||||||| ||||||||| ||||||||||| ||||| |||| Sbjct 1061 CATCGACGATTTCTACGGATGGATCGCATATGACGAGCTTCTCAAAATATGCGATAGATA 1120 Query 837 CCCCTACCGCGTCCCAGTCAAAGGAGGA-TACGAAAACTTCTGCAGCAAGCGAATCTGGA 895 || |||||||| || ||||||||||| | ||||| || | | | ||||| |||| Sbjct 1121 TCCTTACCGCGTACCCATCAAAGGAGGATTTAGAAAATTTGTTTCACTA-CGAATATGGA 1179 Query 896 TAACTTCTAAT 906 | || || ||| Sbjct 1180 TTACATCCAAT 1190 >seq55868 Length=5588 Score = 107 bits (118), Expect = 2e-20 Identities = 148/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 720 CTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGAC-AACCTAATGTGGTCA 778 || ||| |||| ||||| |||||||||| ||||| || || || || | ||| Sbjct 1776 CTTCTATAAACAAAGAGACAAATGGTGGGACGGATA-TGAATACCAAGACAACATCATCA 1718 Query 779 TCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACC 838 |||| |||||||| |||||||| | ||||||||||||| ||||| || || ||||||| Sbjct 1717 TCGATGACTTTTACGGATGGATACCACATGACGAACTTCTTAAAATATGTGATCGATACC 1658 Query 839 CCTACCGCGTCCCAGTCAAAGGAGG-ATACGAAAACTTCTGCAGCAAG-CGAATCTGGAT 896 |||| || || || |||||||||| | ||||| || || | || || |||||||| Sbjct 1657 CCTATCGAGTGCCTATCAAAGGAGGCTTTCGAAAGTTTGTG--TCTAGACGGATCTGGAT 1600 Query 897 AACTTCTAATTACCCCTTAGA 917 || || ||| ||| |||| Sbjct 1599 TACCTCCAATATCCCAATAGA 1579 >seq16718 Length=10213 Score = 98.7 bits (108), Expect = 1e-17 Identities = 140/192 (73%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 723 CTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATCGA 782 |||||||| ||||| | | |||||||| |||||| ||||| || || | || || Sbjct 9233 CTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGA 9174 Query 783 CGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCCTA 842 |||||| || |||||||| ||| ||||| ||||| ||| | || || ||||| || || Sbjct 9173 CGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATA 9114 Query 843 CCGCGTCCCAGTCAAAGGAGGA-TACGAAAACTTCTGCAGCA-AGCGAATCTGGATAACT 900 | | || || ||||||||||| | ||||| | || || ||||||||||| || Sbjct 9113 CAGAGTTCCCATCAAAGGAGGATTTAGAAAA--TGTGTTTCACTCCGAATCTGGATTACC 9056 Query 901 TCTAAT-TACCC 911 || ||| ||||| Sbjct 9055 TCAAATGTACCC 9044 >seq32853 Length=7534 Score = 91.5 bits (100), Expect = 2e-15 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 769 AATGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGC 828 ||||| ||||||| |||||||| |||||||| ||||| ||||||||| ||||| || Sbjct 6473 AATGTTATCATCGATGACTTTTACGGATGGATACCATATGGCGAACTTCTTAAAATATGT 6414 Query 829 GACCGATACCCCTACCGCGTCCCAGTCAAAGGAGG 863 || ||||||||||| || || || | |||||||| Sbjct 6413 GATCGATACCCCTATCGAGTGCCTATTAAAGGAGG 6379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5724110167728