Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_021568.1
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
seq192907 125 8e-26
seq55868 107 2e-20
seq16718 98.7 1e-17
seq32853 91.5 2e-15
>seq192907
Length=1861
Score = 125 bits (138), Expect = 8e-26
Identities = 144/191 (75%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 717 TACCTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGT 776
|| || ||| |||| | ||| | |||||||||| |||||| ||||| ||||| |
Sbjct 1001 TATCTTCTATAAACAACGAGAAAAATGGTGGGACGGATACGAATACCAACCAAATGTCAT 1060
Query 777 CATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATA 836
||||||||| || || |||||||| ||||||||| ||||||||||| ||||| ||||
Sbjct 1061 CATCGACGATTTCTACGGATGGATCGCATATGACGAGCTTCTCAAAATATGCGATAGATA 1120
Query 837 CCCCTACCGCGTCCCAGTCAAAGGAGGA-TACGAAAACTTCTGCAGCAAGCGAATCTGGA 895
|| |||||||| || ||||||||||| | ||||| || | | | ||||| ||||
Sbjct 1121 TCCTTACCGCGTACCCATCAAAGGAGGATTTAGAAAATTTGTTTCACTA-CGAATATGGA 1179
Query 896 TAACTTCTAAT 906
| || || |||
Sbjct 1180 TTACATCCAAT 1190
>seq55868
Length=5588
Score = 107 bits (118), Expect = 2e-20
Identities = 148/201 (74%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 720 CTACTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGAC-AACCTAATGTGGTCA 778
|| ||| |||| ||||| |||||||||| ||||| || || || || | |||
Sbjct 1776 CTTCTATAAACAAAGAGACAAATGGTGGGACGGATA-TGAATACCAAGACAACATCATCA 1718
Query 779 TCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACC 838
|||| |||||||| |||||||| | ||||||||||||| ||||| || || |||||||
Sbjct 1717 TCGATGACTTTTACGGATGGATACCACATGACGAACTTCTTAAAATATGTGATCGATACC 1658
Query 839 CCTACCGCGTCCCAGTCAAAGGAGG-ATACGAAAACTTCTGCAGCAAG-CGAATCTGGAT 896
|||| || || || |||||||||| | ||||| || || | || || ||||||||
Sbjct 1657 CCTATCGAGTGCCTATCAAAGGAGGCTTTCGAAAGTTTGTG--TCTAGACGGATCTGGAT 1600
Query 897 AACTTCTAATTACCCCTTAGA 917
|| || ||| ||| ||||
Sbjct 1599 TACCTCCAATATCCCAATAGA 1579
>seq16718
Length=10213
Score = 98.7 bits (108), Expect = 1e-17
Identities = 140/192 (73%), Gaps = 5/192 (3%)
Strand=Plus/Minus
Query 723 CTACAAACCAAGAGGAGAATGGTGGGATGGATACTGTGGACAACCTAATGTGGTCATCGA 782
|||||||| ||||| | | |||||||| |||||| ||||| || || | || ||
Sbjct 9233 CTACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGA 9174
Query 783 CGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGCGACCGATACCCCTA 842
|||||| || |||||||| ||| ||||| ||||| ||| | || || ||||| || ||
Sbjct 9173 CGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATA 9114
Query 843 CCGCGTCCCAGTCAAAGGAGGA-TACGAAAACTTCTGCAGCA-AGCGAATCTGGATAACT 900
| | || || ||||||||||| | ||||| | || || ||||||||||| ||
Sbjct 9113 CAGAGTTCCCATCAAAGGAGGATTTAGAAAA--TGTGTTTCACTCCGAATCTGGATTACC 9056
Query 901 TCTAAT-TACCC 911
|| ||| |||||
Sbjct 9055 TCAAATGTACCC 9044
>seq32853
Length=7534
Score = 91.5 bits (100), Expect = 2e-15
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 769 AATGTGGTCATCGACGACTTTTATGGATGGATTAAATATGACGAACTTCTCAAAATTTGC 828
||||| ||||||| |||||||| |||||||| ||||| ||||||||| ||||| ||
Sbjct 6473 AATGTTATCATCGATGACTTTTACGGATGGATACCATATGGCGAACTTCTTAAAATATGT 6414
Query 829 GACCGATACCCCTACCGCGTCCCAGTCAAAGGAGG 863
|| ||||||||||| || || || | ||||||||
Sbjct 6413 GATCGATACCCCTATCGAGTGCCTATTAAAGGAGG 6379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5724110167728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |