Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_021707.2 Length=1855 Score E Sequences producing significant alignments: (Bits) Value seq192907 114 1e-22 seq251874 109 6e-21 seq16718 100 3e-18 >seq192907 Length=1861 Score = 114 bits (126), Expect = 1e-22 Identities = 194/275 (71%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 692 TTTAAAACGGAAGTCTTTTACTTTTGGGGACCGACTGGAACTGGAAAGTCCCGTAAAGCG 751 |||||||||||||||| |||| |||||| | ||| |||||||| || ||| Sbjct 912 TTTAAAACGGAAGTCTAATACTACTGGGGAGAACCAGGAGTCGGAAAGTCATCTAGAGC- 970 Query 752 CGCGAGGAGAGCCTCGCTCTT--GGTG-AC--ACCTACTACAAGCCGCGTGGAGAATGGT 806 | | | |||| || ||| |||| || | || ||| || | || | | |||||| Sbjct 971 CTTG-GCAGAGGCTACTGCTTACGGTGGACCTATCTTCTATAAACAACGAGAAAAATGGT 1029 Query 807 GGGATGGATACACCGGACAACCGTGCGTTGTTATCGATGACTTCTACGGATGGATCAAAT 866 |||| |||||| ||||| || | ||||| || ||||||||||||||| || Sbjct 1030 GGGACGGATACGAATACCAACCAAATGTCATCATCGACGATTTCTACGGATGGATCGCAT 1089 Query 867 ACGATGAGCTTCTCAAGATCTGCGACAGATATCCTTACAGAGTCCCTGTCAAAGGAGGAT 926 | || ||||||||||| || ||||| |||||||||||| | || || |||||||||||| Sbjct 1090 ATGACGAGCTTCTCAAAATATGCGATAGATATCCTTACCGCGTACCCATCAAAGGAGGAT 1149 Query 927 ATGAAAACTTCGTATCTAAATATATATGGATCACA 961 | ||| || || || | |||||||| ||| Sbjct 1150 TTAGAAAATTTGTTTCACTACGAATATGGATTACA 1184 >seq251874 Length=1306 Score = 109 bits (120), Expect = 6e-21 Identities = 194/276 (70%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 692 TTTAAAACGGAAGTCTTTTACTTTTGGGGACCGACTGGAACT-GGAAAGTCCCGTAAAGC 750 || ||||| || || | ||||| || || || || || | |||||||| || ||| Sbjct 407 TTCAAAACTGAGGTATATTACTATTACGG-CCAACCGGGTGTAGGAAAGTCTCGACGAGC 465 Query 751 GCGCGAGGAGAGCCTC-GCTCTTGGTGACACCTAC----TACAAGCCGCGTGGAGAATGG 805 | ||| || ||| || ||| | ||||| ||||| || || | || ||| ||| Sbjct 466 CCTCGAAGA-AGCTTCTGCTGTCGGTGA-ACCTATCTTTTATAAACAACGAGGACCTTGG 523 Query 806 TGGGATGGATACACCGGACAACCGTGCGTTGTTATCGATGACTTCTACGGATGGATCAAA 865 ||||| ||||| | ||||| ||| | || || |||||||||||||||||| Sbjct 524 TGGGACGGATATGACTTCCAACCCAACGTCATCATTGACGACTTCTACGGATGGATCGCC 583 Query 866 TACGATGAGCTTCTCAAGATCTGCGACAGATATCCTTACAGAGTCCCTGTCAAAGGAGGA 925 ||||| |||||||| || || || || |||||||| |||||||| || ||||||| ||| Sbjct 584 TACGACGAGCTTCTTAAAATATGTGATAGATATCCATACAGAGTGCCCATCAAAGGCGGA 643 Query 926 TATGAAAACTTCGTATCTAAATATATATGGATCACA 961 | | ||| || || || || |||||||| ||| Sbjct 644 TTTAGAAAATTTGTTTCAAAGAGAATATGGATTACA 679 >seq16718 Length=10213 Score = 100 bits (110), Expect = 3e-18 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 803 TGGTGGGATGGATACACCGGACAACCGTGCGTTGTTATCGATGACTTCTACGGATGGATC 862 |||||||| |||||| ||||| ||| |||| || |||||||||||||||||| Sbjct 9214 TGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGACGACTTCTACGGATGGATC 9155 Query 863 AAATACGATGAGCTTCTCAAGATCTGCGACAGATATCCTTACAGAGTCCCTGTCAAAGGA 922 |||||| |||||||| || | || || ||||||| |||||||| || |||||||| Sbjct 9154 GCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATACAGAGTTCCCATCAAAGGA 9095 Query 923 GGATAT-GAAAA 933 |||| | ||||| Sbjct 9094 GGATTTAGAAAA 9083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5797332934056