Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_023866.1
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
seq55868 91.5 2e-15
seq32853 89.7 6e-15
seq16718 80.6 3e-12
>seq55868
Length=5588
Score = 91.5 bits (100), Expect = 2e-15
Identities = 117/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 1025 GTAATCCATATGCGTCTGCTTGTAAATTCTTCGAAC-CCTCCTTTGACTTGTACCTTGTA 1083
|||||||| || ||||| ||| | |||||| |||||||||| | || ||
Sbjct 1597 GTAATCCAGATCCGTCTAGACACAAACT-TTCGAAAGCCTCCTTTGATAGGCACTCGATA 1655
Query 1084 GGGGTATCGGTCCATTATTTTCAGCATTTCGTCATATTTTATCCATCCATAGAAGTCGTC 1143
||||||||| || |||||| || | |||||||| | ||||||||| || ||||| ||
Sbjct 1656 GGGGTATCGATCACATATTTTAAGAAGTTCGTCATGTGGTATCCATCCGTAAAAGTCATC 1715
Query 1144 TATGATGACGTTGTCCTGTTGATGGTAGCCGTCCCACCA 1182
||||||| |||||| || | | || |||||||||||
Sbjct 1716 GATGATGATGTTGTCTTGGTATTCATATCCGTCCCACCA 1754
>seq32853
Length=7534
Score = 89.7 bits (98), Expect = 6e-15
Identities = 136/190 (72%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 994 TTTGTAAAGTTGATCAGTATCAACGTTACTTGTAATCCATATGCGTCTGCTTGTAAATTC 1053
|||||||||||| || | | || || ||||| || || ||||| ||| |
Sbjct 6313 TTTGTAAAGTTGGTCTAT-TGGACATTGGAGGTAATTCAGATCCGTCTAGACACAAACT- 6370
Query 1054 TTCGAAC-CCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTT 1112
|||||| |||||||| | | || ||||||||||| || |||||| || | ||
Sbjct 6371 TTCGAAAGCCTCCTTTAATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTT 6430
Query 1113 CGTCATATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGATGGTAGC 1172
|| ||||| ||||||||| || ||||| || ||||| || |||||||| | | |||||
Sbjct 6431 CGCCATATGGTATCCATCCGTAAAAGTCATCGATGATAACATTGTCCTGATATTCGTAGC 6490
Query 1173 CGTCCCACCA 1182
| ||||||||
Sbjct 6491 CATCCCACCA 6500
>seq16718
Length=10213
Score = 80.6 bits (88), Expect = 3e-12
Identities = 107/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 1058 AACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTTCGTCA 1117
|| |||||||||| | || |||| || ||||| || || ||| || | |||||
Sbjct 9090 AATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCG 9149
Query 1118 TATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGATGGTAGCCGTCC 1177
||| |||||||| ||||||||||| || |||||||| || | | ||| ||||||
Sbjct 9150 TATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCC 9209
Query 1178 CACCAGAGCCCTCTAGGTTTGTAGTAAAT 1206
||||| |||| |||||||| ||||
Sbjct 9210 CACCACTTTTCTCTTTGTTTGTAGAAAAT 9238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5571297438000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |