Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_023866.1 Length=1784 Score E Sequences producing significant alignments: (Bits) Value seq55868 91.5 2e-15 seq32853 89.7 6e-15 seq16718 80.6 3e-12 >seq55868 Length=5588 Score = 91.5 bits (100), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 1025 GTAATCCATATGCGTCTGCTTGTAAATTCTTCGAAC-CCTCCTTTGACTTGTACCTTGTA 1083 |||||||| || ||||| ||| | |||||| |||||||||| | || || Sbjct 1597 GTAATCCAGATCCGTCTAGACACAAACT-TTCGAAAGCCTCCTTTGATAGGCACTCGATA 1655 Query 1084 GGGGTATCGGTCCATTATTTTCAGCATTTCGTCATATTTTATCCATCCATAGAAGTCGTC 1143 ||||||||| || |||||| || | |||||||| | ||||||||| || ||||| || Sbjct 1656 GGGGTATCGATCACATATTTTAAGAAGTTCGTCATGTGGTATCCATCCGTAAAAGTCATC 1715 Query 1144 TATGATGACGTTGTCCTGTTGATGGTAGCCGTCCCACCA 1182 ||||||| |||||| || | | || ||||||||||| Sbjct 1716 GATGATGATGTTGTCTTGGTATTCATATCCGTCCCACCA 1754 >seq32853 Length=7534 Score = 89.7 bits (98), Expect = 6e-15 Identities = 136/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 994 TTTGTAAAGTTGATCAGTATCAACGTTACTTGTAATCCATATGCGTCTGCTTGTAAATTC 1053 |||||||||||| || | | || || ||||| || || ||||| ||| | Sbjct 6313 TTTGTAAAGTTGGTCTAT-TGGACATTGGAGGTAATTCAGATCCGTCTAGACACAAACT- 6370 Query 1054 TTCGAAC-CCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTT 1112 |||||| |||||||| | | || ||||||||||| || |||||| || | || Sbjct 6371 TTCGAAAGCCTCCTTTAATAGGCACTCGATAGGGGTATCGATCACATATTTTAAGAAGTT 6430 Query 1113 CGTCATATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGATGGTAGC 1172 || ||||| ||||||||| || ||||| || ||||| || |||||||| | | ||||| Sbjct 6431 CGCCATATGGTATCCATCCGTAAAAGTCATCGATGATAACATTGTCCTGATATTCGTAGC 6490 Query 1173 CGTCCCACCA 1182 | |||||||| Sbjct 6491 CATCCCACCA 6500 >seq16718 Length=10213 Score = 80.6 bits (88), Expect = 3e-12 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 1058 AACCCTCCTTTGACTTGTACCTTGTAGGGGTATCGGTCCATTATTTTCAGCATTTCGTCA 1117 || |||||||||| | || |||| || ||||| || || ||| || | ||||| Sbjct 9090 AATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCG 9149 Query 1118 TATTTTATCCATCCATAGAAGTCGTCTATGATGACGTTGTCCTGTTGATGGTAGCCGTCC 1177 ||| |||||||| ||||||||||| || |||||||| || | | ||| |||||| Sbjct 9150 TATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCC 9209 Query 1178 CACCAGAGCCCTCTAGGTTTGTAGTAAAT 1206 ||||| |||| |||||||| |||| Sbjct 9210 CACCACTTTTCTCTTTGTTTGTAGAAAAT 9238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5571297438000