Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_023867.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value seq55868 82.4 8e-13 seq16718 82.4 8e-13 seq192907 80.6 3e-12 >seq55868 Length=5588 Score = 82.4 bits (90), Expect = 8e-13 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTC-CATAATTTTGAGCATTTCGTC 946 || |||||||| | | ||| | || ||||| || || |||| |||| || | |||||| Sbjct 1630 AAGCCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATA-TTTTAAGAAGTTCGTC 1688 Query 947 ATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGTC 1006 || | |||||||||||| ||||||||||| || | | | ||| | || |||||||| Sbjct 1689 ATGTGGTATCCATCCGTAAAAGTCATCGATGATGATGTTGTCTTGGTATTCATATCCGTC 1748 Query 1007 CCACCAT 1013 ||||||| Sbjct 1749 CCACCAT 1755 >seq16718 Length=10213 Score = 82.4 bits (90), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTC-CATAATTTTGAGCATTTCGTC 946 ||||||||||| | ||||| |||||| || || || ||| | ||| || | ||||| Sbjct 9090 AATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACAT-ACTTTAAGAAGCTCGTC 9148 Query 947 ATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGTC 1006 ||| ||||||||||||||||| || || || ||| | ||| | || ||||||||| Sbjct 9149 GTATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTC 9208 Query 1007 CCACCATAGTCCTCTGGGCTTGTA 1030 |||||| | |||| | ||||| Sbjct 9209 CCACCACTTTTCTCTTTGTTTGTA 9232 >seq192907 Length=1861 Score = 80.6 bits (88), Expect = 3e-12 Identities = 98/129 (76%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTC-CATAATTTTGAGCATTTCGTC 946 ||||||||||| | | || |||| || || | || |||| ||||||| | ||||| Sbjct 1150 AATCCTCCTTTGATGGGTACGCGGTAAGGATATCTATCGCATA-TTTTGAGAAGCTCGTC 1092 Query 947 ATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTT--TTGTTGTTGGTATCCG 1004 |||| |||||||||||||| || ||||| || || |||| ||| | || ||||||| Sbjct 1091 ATATGCGATCCATCCGTAGAAATCGTCGATGATGAC--ATTTGGTTGGTATTCGTATCCG 1034 Query 1005 TCCCACCAT 1013 ||||||||| Sbjct 1033 TCCCACCAT 1025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5431219102416