Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_023867.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
seq55868 82.4 8e-13
seq16718 82.4 8e-13
seq192907 80.6 3e-12
>seq55868
Length=5588
Score = 82.4 bits (90), Expect = 8e-13
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTC-CATAATTTTGAGCATTTCGTC 946
|| |||||||| | | ||| | || ||||| || || |||| |||| || | ||||||
Sbjct 1630 AAGCCTCCTTTGATAGGCACTCGATAGGGGTATCGATCACATA-TTTTAAGAAGTTCGTC 1688
Query 947 ATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGTC 1006
|| | |||||||||||| ||||||||||| || | | | ||| | || ||||||||
Sbjct 1689 ATGTGGTATCCATCCGTAAAAGTCATCGATGATGATGTTGTCTTGGTATTCATATCCGTC 1748
Query 1007 CCACCAT 1013
|||||||
Sbjct 1749 CCACCAT 1755
>seq16718
Length=10213
Score = 82.4 bits (90), Expect = 8e-13
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTC-CATAATTTTGAGCATTTCGTC 946
||||||||||| | ||||| |||||| || || || ||| | ||| || | |||||
Sbjct 9090 AATCCTCCTTTGATGGGAACTCTGTATGGATATCGATCACAT-ACTTTAAGAAGCTCGTC 9148
Query 947 ATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTTTTGTTGTTGGTATCCGTC 1006
||| ||||||||||||||||| || || || ||| | ||| | || |||||||||
Sbjct 9149 GTATGCGATCCATCCGTAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTC 9208
Query 1007 CCACCATAGTCCTCTGGGCTTGTA 1030
|||||| | |||| | |||||
Sbjct 9209 CCACCACTTTTCTCTTTGTTTGTA 9232
>seq192907
Length=1861
Score = 80.6 bits (88), Expect = 3e-12
Identities = 98/129 (76%), Gaps = 6/129 (5%)
Strand=Plus/Minus
Query 888 AATCCTCCTTTCACTTGAACTTGGTATGGGTAGCGGTC-CATAATTTTGAGCATTTCGTC 946
||||||||||| | | || |||| || || | || |||| ||||||| | |||||
Sbjct 1150 AATCCTCCTTTGATGGGTACGCGGTAAGGATATCTATCGCATA-TTTTGAGAAGCTCGTC 1092
Query 947 ATATTTTATCCATCCGTAGAAGTCATCGATTATTACGCATTT--TTGTTGTTGGTATCCG 1004
|||| |||||||||||||| || ||||| || || |||| ||| | || |||||||
Sbjct 1091 ATATGCGATCCATCCGTAGAAATCGTCGATGATGAC--ATTTGGTTGGTATTCGTATCCG 1034
Query 1005 TCCCACCAT 1013
|||||||||
Sbjct 1033 TCCCACCAT 1025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5431219102416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |