Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_023869.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
seq16718 141 1e-30
seq192907 134 2e-28
seq251874 125 8e-26
seq55868 104 3e-19
seq32853 86.0 7e-14
>seq16718
Length=10213
Score = 141 bits (156), Expect = 1e-30
Identities = 149/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 986 ACATTTGATGTAATCCATATGTGTTTGCTTGTAA---ATTCTTGAAAGCCTCCTTTGATC 1042
|||||||| |||||||| || | | || || ||| | ||| |||||||||||
Sbjct 9048 ACATTTGAGGTAATCCAGATTCG---GAGTGAAACACATTTTCTAAATCCTCCTTTGATG 9104
Query 1043 GGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCG 1102
|| ||| |||| || |||| ||||| | ||| || || ||||||||| ||||||||||
Sbjct 9105 GGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCGTATGCGATCCATCCG 9164
Query 1103 TAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTT 1162
||||||||||| ||||| || ||| ||| | | ||||||||||||||| | | |||||
Sbjct 9165 TAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCCCACCACTTTTCTCTT 9224
Query 1163 GGTTTGTAGTATATG 1177
|||||||| | |||
Sbjct 9225 TGTTTGTAGAAAATG 9239
>seq192907
Length=1861
Score = 134 bits (148), Expect = 2e-28
Identities = 140/184 (76%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 988 ATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGGTAC 1047
||| |||||||||||||| || ||||| | ||| ||||||||||| |||||
Sbjct 1190 ATTGGATGTAATCCATATTCGTAGTGAAACAAATTTTCTAAATCCTCCTTTGATGGGTAC 1131
Query 1048 TTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAGAA 1107
||| || ||||| || || |||||||| || ||||| ||| |||||||||||||||
Sbjct 1130 GCGGTAAGGATATCTATCGCATATTTTGAGAAGCTCGTCATATGCGATCCATCCGTAGAA 1071
Query 1108 GTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTT 1167
||||| || || ||| ||| ||| | | ||||||||||||||||| | ||| | ||||
Sbjct 1070 ATCGTCGATGATGACATTTGGTTGGTATTCGTATCCGTCCCACCATTTTTCTCGTTGTTT 1011
Query 1168 GTAG 1171
|||
Sbjct 1010 ATAG 1007
>seq251874
Length=1306
Score = 125 bits (138), Expect = 8e-26
Identities = 141/186 (76%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 986 ACATTTGATGTAATCCATATG-TGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGG 1044
||||| |||||||||||||| | |||| ||||| | ||| || |||||||| ||
Sbjct 687 ACATTGGATGTAATCCATATTCTCTTTGAAAC-AAATTTTCTAAATCCGCCTTTGATGGG 629
Query 1045 TACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTA 1104
||| |||| || ||||| ||||| ||||| || || |||||||| ||||||||||||
Sbjct 628 CACTCTGTATGGATATCTATCACATATTTTAAGAAGCTCGTCGTAGGCGATCCATCCGTA 569
Query 1105 GAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGG 1164
||||||||| || || || | | ||| || |||||||||||||| ||||| | |
Sbjct 568 GAAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTCCCACCAAGGTCCTCGTTG 509
Query 1165 TTTGTA 1170
||| ||
Sbjct 508 TTTATA 503
>seq55868
Length=5588
Score = 104 bits (114), Expect = 3e-19
Identities = 141/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 985 GACATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGG 1044
|| ||| || |||||||| || || | ||| | | |||||||||||||||| ||
Sbjct 1587 GATATTGGAGGTAATCCAGATCCGTCTAGACACAAACTTTCGAAAGCCTCCTTTGATAGG 1646
Query 1045 TACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTA 1104
||| |||||||||| ||||| ||||| || || ||||| | | |||||||||||
Sbjct 1647 CACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGTCATGTGGTATCCATCCGTA 1706
Query 1105 GAAGTCGTCTATAATTACACTTGT-TTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTG 1163
||||| || || || | |||| ||| | | |||||||||||||||| |||||
Sbjct 1707 AAAGTCATCGATGATGA-TGTTGTCTTGGTATTCATATCCGTCCCACCATTTGTCTCTTT 1765
Query 1164 GTTTGTAGTATATG 1177
|||| ||| | |||
Sbjct 1766 GTTTATAGAAGATG 1779
>seq32853
Length=7534
Score = 86.0 bits (94), Expect = 7e-14
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 985 GACATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGG 1044
|||||| || ||||| || || || | ||| | | ||||||||||||| || ||
Sbjct 6333 GACATTGGAGGTAATTCAGATCCGTCTAGACACAAACTTTCGAAAGCCTCCTTTAATAGG 6392
Query 1045 TACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTA 1104
||| |||||||||| ||||| ||||| || || ||| | ||| |||||||||||
Sbjct 6393 CACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGCCATATGGTATCCATCCGTA 6452
Query 1105 GAAGTCGTCTATAATTACACTTGT-TTGTTGGTGGTATCCGTCCCACCA 1152
||||| || || || ||| |||| || | | ||| || ||||||||
Sbjct 6453 AAAGTCATCGATGATAACA-TTGTCCTGATATTCGTAGCCATCCCACCA 6500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5927860474032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |