Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_023869.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value seq16718 141 1e-30 seq192907 134 2e-28 seq251874 125 8e-26 seq55868 104 3e-19 seq32853 86.0 7e-14 >seq16718 Length=10213 Score = 141 bits (156), Expect = 1e-30 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 986 ACATTTGATGTAATCCATATGTGTTTGCTTGTAA---ATTCTTGAAAGCCTCCTTTGATC 1042 |||||||| |||||||| || | | || || ||| | ||| ||||||||||| Sbjct 9048 ACATTTGAGGTAATCCAGATTCG---GAGTGAAACACATTTTCTAAATCCTCCTTTGATG 9104 Query 1043 GGTACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCG 1102 || ||| |||| || |||| ||||| | ||| || || ||||||||| |||||||||| Sbjct 9105 GGAACTCTGTATGGATATCGATCACATACTTTAAGAAGCTCGTCGTATGCGATCCATCCG 9164 Query 1103 TAGAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTT 1162 ||||||||||| ||||| || ||| ||| | | ||||||||||||||| | | ||||| Sbjct 9165 TAGAAGTCGTCAATAATGACGTTTGGTTGATATTCGTATCCGTCCCACCACTTTTCTCTT 9224 Query 1163 GGTTTGTAGTATATG 1177 |||||||| | ||| Sbjct 9225 TGTTTGTAGAAAATG 9239 >seq192907 Length=1861 Score = 134 bits (148), Expect = 2e-28 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 988 ATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGGTAC 1047 ||| |||||||||||||| || ||||| | ||| ||||||||||| ||||| Sbjct 1190 ATTGGATGTAATCCATATTCGTAGTGAAACAAATTTTCTAAATCCTCCTTTGATGGGTAC 1131 Query 1048 TTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTAGAA 1107 ||| || ||||| || || |||||||| || ||||| ||| ||||||||||||||| Sbjct 1130 GCGGTAAGGATATCTATCGCATATTTTGAGAAGCTCGTCATATGCGATCCATCCGTAGAA 1071 Query 1108 GTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGGTTT 1167 ||||| || || ||| ||| ||| | | ||||||||||||||||| | ||| | |||| Sbjct 1070 ATCGTCGATGATGACATTTGGTTGGTATTCGTATCCGTCCCACCATTTTTCTCGTTGTTT 1011 Query 1168 GTAG 1171 ||| Sbjct 1010 ATAG 1007 >seq251874 Length=1306 Score = 125 bits (138), Expect = 8e-26 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 986 ACATTTGATGTAATCCATATG-TGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGG 1044 ||||| |||||||||||||| | |||| ||||| | ||| || |||||||| || Sbjct 687 ACATTGGATGTAATCCATATTCTCTTTGAAAC-AAATTTTCTAAATCCGCCTTTGATGGG 629 Query 1045 TACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTA 1104 ||| |||| || ||||| ||||| ||||| || || |||||||| |||||||||||| Sbjct 628 CACTCTGTATGGATATCTATCACATATTTTAAGAAGCTCGTCGTAGGCGATCCATCCGTA 569 Query 1105 GAAGTCGTCTATAATTACACTTGTTTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTGG 1164 ||||||||| || || || | | ||| || |||||||||||||| ||||| | | Sbjct 568 GAAGTCGTCAATGATGACGTTGGGTTGGAAGTCATATCCGTCCCACCAAGGTCCTCGTTG 509 Query 1165 TTTGTA 1170 ||| || Sbjct 508 TTTATA 503 >seq55868 Length=5588 Score = 104 bits (114), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 985 GACATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGG 1044 || ||| || |||||||| || || | ||| | | |||||||||||||||| || Sbjct 1587 GATATTGGAGGTAATCCAGATCCGTCTAGACACAAACTTTCGAAAGCCTCCTTTGATAGG 1646 Query 1045 TACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTA 1104 ||| |||||||||| ||||| ||||| || || ||||| | | ||||||||||| Sbjct 1647 CACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGTCATGTGGTATCCATCCGTA 1706 Query 1105 GAAGTCGTCTATAATTACACTTGT-TTGTTGGTGGTATCCGTCCCACCATTCTCCTCTTG 1163 ||||| || || || | |||| ||| | | |||||||||||||||| ||||| Sbjct 1707 AAAGTCATCGATGATGA-TGTTGTCTTGGTATTCATATCCGTCCCACCATTTGTCTCTTT 1765 Query 1164 GTTTGTAGTATATG 1177 |||| ||| | ||| Sbjct 1766 GTTTATAGAAGATG 1779 >seq32853 Length=7534 Score = 86.0 bits (94), Expect = 7e-14 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 985 GACATTTGATGTAATCCATATGTGTTTGCTTGTAAATTCTTGAAAGCCTCCTTTGATCGG 1044 |||||| || ||||| || || || | ||| | | ||||||||||||| || || Sbjct 6333 GACATTGGAGGTAATTCAGATCCGTCTAGACACAAACTTTCGAAAGCCTCCTTTAATAGG 6392 Query 1045 TACTTTGTAGGGGTATCTGTCACAAATTTTGAGTAGGTCGTCGTATTTGATCCATCCGTA 1104 ||| |||||||||| ||||| ||||| || || ||| | ||| ||||||||||| Sbjct 6393 CACTCGATAGGGGTATCGATCACATATTTTAAGAAGTTCGCCATATGGTATCCATCCGTA 6452 Query 1105 GAAGTCGTCTATAATTACACTTGT-TTGTTGGTGGTATCCGTCCCACCA 1152 ||||| || || || ||| |||| || | | ||| || |||||||| Sbjct 6453 AAAGTCATCGATGATAACA-TTGTCCTGATATTCGTAGCCATCCCACCA 6500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5927860474032