Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_023874.1 Length=1790 Score E Sequences producing significant alignments: (Bits) Value seq16718 93.3 5e-16 seq251874 78.8 1e-11 >seq16718 Length=10213 Score = 93.3 bits (102), Expect = 5e-16 Identities = 109/147 (74%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 728 TATAAACCCAGAGGAGAATGGTGGGACGGCTAC----ATGCAGCAAACGTCTGTTATTAT 783 || |||| |||| | | ||||||||||| ||| || | |||||||| ||||| Sbjct 9232 TACAAACAAAGAGAAAAGTGGTGGGACGGATACGAATATCAACCAAACGTC----ATTAT 9177 Query 784 AGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGATACCC 843 || |||||||| || ||||| |||||| || || || ||| ||||||| |||| || Sbjct 9176 TGACGACTTCTACGGATGGATCGCATACGACGAGCTTCTTAAAGTATGTGATCGATATCC 9117 Query 844 ACACAAGGTTCCAATAAAAGGAGGATT 870 | ||| ||||| || ||||||||||| Sbjct 9116 ATACAGAGTTCCCATCAAAGGAGGATT 9090 >seq251874 Length=1306 Score = 78.8 bits (86), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 8/152 (5%) Strand=Plus/Plus Query 723 TCTATTATAAACCCAGAGGAGAATGGTGGGACGGCTA---CATGCAGCA-AACGTCTGTT 778 ||| |||||||| ||||| ||||||||||| || | | || | |||||| Sbjct 498 TCTTTTATAAACAACGAGGACCTTGGTGGGACGGATATGACTTCCAACCCAACGTC---- 553 Query 779 ATTATAGATGACTTCTATGGCTGGATAAAATACGATGAACTGCTGAAAATATGTGACAGA 838 || || || |||||||| || ||||| ||||| || || || ||||||||||| ||| Sbjct 554 ATCATTGACGACTTCTACGGATGGATCGCCTACGACGAGCTTCTTAAAATATGTGATAGA 613 Query 839 TACCCACACAAGGTTCCAATAAAAGGAGGATT 870 || ||| ||| || || || ||||| ||||| Sbjct 614 TATCCATACAGAGTGCCCATCAAAGGCGGATT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5590399029216