Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014-
09-26] 482,396 sequences; 1,258,717,181 total letters
Query= NC_023886.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
seq251874 114 1e-22
seq16718 114 1e-22
seq192907 104 3e-19
seq55868 102 9e-19
seq32853 100 3e-18
>seq251874
Length=1306
Score = 114 bits (126), Expect = 1e-22
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 735 ATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGCGTCATC 794
|||| |||||||| || || | |||||||| || ||| | || | | |||||||
Sbjct 497 ATCTTTTATAAACAACGAGGACCTTGGTGGGACGGATATGACTTCCAACCCAACGTCATC 556
Query 795 ATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATAT 854
|| ||||||||||| |||||||| |||||||| ||||||||||||||||| |||||
Sbjct 557 ATTGACGACTTCTACGGATGGATCGCCTACGACGAGCTTCTTAAAATATGTGATAGATAT 616
Query 855 CCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATT 892
||||||| || | || ||||| || ||| | ||||
Sbjct 617 CCATACAGAGTGCCCATCAAAGGCGGATTTAGAAAATT 654
>seq16718
Length=10213
Score = 114 bits (126), Expect = 1e-22
Identities = 101/126 (80%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 759 TGGTGGGATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATA 818
|||||||| || || || | || | | |||||| || ||||||||||| ||||||||
Sbjct 9214 TGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGACGACTTCTACGGATGGATC 9155
Query 819 AAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAGGA 878
||||||||| ||||||||| ||||||| ||||||||||||| |||| || ||||||
Sbjct 9154 GCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATACAGAGTTCCCATCAAAGGA 9095
Query 879 GGCTTT 884
|| |||
Sbjct 9094 GGATTT 9089
>seq192907
Length=1861
Score = 104 bits (114), Expect = 3e-19
Identities = 173/248 (70%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 645 AAATCTGAGGTCTACTATTATTGGGGTCCACCAGGAACCGGAAAATCAAAAACCGCTCTG 704
||| | || ||||| || || ||||| ||||||| |||||| ||| | || ||
Sbjct 915 AAAACGGAAGTCTAATACTACTGGGGAGAACCAGGAGTCGGAAAGTCATCTAGAGCCTTG 974
Query 705 GAAAAAGCAACCGCCTACAATACCGACTCCATCTATTATAAACCGCGTGGTCTATGGTGG 764
| | | || || || ||| | ||| | |||| ||||||| || | |||||||
Sbjct 975 GCAGAGGCTACTGCTTACGGTG--GAC-CTATCTTCTATAAACAACGAGAAAAATGGTGG 1031
Query 765 GATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATAAAATAC 824
|| || || || | || | | |||||||||||||| ||||| |||||||| |||
Sbjct 1032 GACGGATACGAATACCAACCAAATGTCATCATCGACGATTTCTACGGATGGATCGCATAT 1091
Query 825 GACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAGGAGGCTTT 884
||||| ||||| |||||||| || ||||||| ||| || | || |||||||| |||
Sbjct 1092 GACGAGCTTCTCAAAATATGCGATAGATATCCTTACCGCGTACCCATCAAAGGAGGATTT 1151
Query 885 GAAGAATT 892
| ||||
Sbjct 1152 AGAAAATT 1159
>seq55868
Length=5588
Score = 102 bits (112), Expect = 9e-19
Identities = 101/128 (79%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 758 ATGGTGGGATGGTTATCAACAGCA-GACTAGCGTCATCATCGACGACTTCTATGGATGGA 816
||||||||| || ||| || | || ||| | | |||||||||| ||||| || |||||||
Sbjct 1755 ATGGTGGGACGGATATGAATACCAAGACAA-CATCATCATCGATGACTTTTACGGATGGA 1697
Query 817 TAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAG 876
|| | | ||||||||||||||||||||||| ||||| || || || | || ||||
Sbjct 1696 TACCACATGACGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATCAAAG 1637
Query 877 GAGGCTTT 884
||||||||
Sbjct 1636 GAGGCTTT 1629
>seq32853
Length=7534
Score = 100 bits (110), Expect = 3e-18
Identities = 171/246 (70%), Gaps = 13/246 (5%)
Strand=Plus/Minus
Query 644 CAAATCTGAGGTCTACTATTAT--TGGGGTCCACCAGGAACCGGAAAATCAAAAACCGCT 701
|||| | ||||| | | ||||| ||||| ||||||| ||||| |||| || ||
Sbjct 6612 CAAAACAGAGGTATTCCATTATCATGGGG--CACCAGGTGTAGGAAAGTCAAGAAGAGCC 6555
Query 702 CTGGAAAAAGCAACCGCCTACAATACCGAC---TCCATCTATTATAAACCGCGTGGTCTA 758
|||||| |||| || ||| || ||||| | ||||| | || |
Sbjct 6554 CTGGAAGAAGCTACT------AATGTCGGTGGATCCATTTTCTATAAGCAACGAGACAAG 6501
Query 759 TGGTGGGATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATA 818
||||||||||| || || | ||| | || |||||||| ||||| || |||||||||
Sbjct 6500 TGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTACGGATGGATA 6441
Query 819 AAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAGGA 878
||| | ||||||||||||||||||||| ||||| || || || | || ||||||
Sbjct 6440 CCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATTAAAGGA 6381
Query 879 GGCTTT 884
||||||
Sbjct 6380 GGCTTT 6375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5434402700952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |