Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirometra_20erinaceieuropaei_20[genbank_20GCA_5F000951995.1_202014- 09-26] 482,396 sequences; 1,258,717,181 total letters Query= NC_023886.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value seq251874 114 1e-22 seq16718 114 1e-22 seq192907 104 3e-19 seq55868 102 9e-19 seq32853 100 3e-18 >seq251874 Length=1306 Score = 114 bits (126), Expect = 1e-22 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 735 ATCTATTATAAACCGCGTGGTCTATGGTGGGATGGTTATCAACAGCAGACTAGCGTCATC 794 |||| |||||||| || || | |||||||| || ||| | || | | ||||||| Sbjct 497 ATCTTTTATAAACAACGAGGACCTTGGTGGGACGGATATGACTTCCAACCCAACGTCATC 556 Query 795 ATCGACGACTTCTATGGATGGATAAAATACGACGAACTTCTTAAAATATGTGACCGATAT 854 || ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct 557 ATTGACGACTTCTACGGATGGATCGCCTACGACGAGCTTCTTAAAATATGTGATAGATAT 616 Query 855 CCATACAAGGTTCAAATAAAAGGAGGCTTTGAAGAATT 892 ||||||| || | || ||||| || ||| | |||| Sbjct 617 CCATACAGAGTGCCCATCAAAGGCGGATTTAGAAAATT 654 >seq16718 Length=10213 Score = 114 bits (126), Expect = 1e-22 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 759 TGGTGGGATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATA 818 |||||||| || || || | || | | |||||| || ||||||||||| |||||||| Sbjct 9214 TGGTGGGACGGATACGAATATCAACCAAACGTCATTATTGACGACTTCTACGGATGGATC 9155 Query 819 AAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAGGA 878 ||||||||| ||||||||| ||||||| ||||||||||||| |||| || |||||| Sbjct 9154 GCATACGACGAGCTTCTTAAAGTATGTGATCGATATCCATACAGAGTTCCCATCAAAGGA 9095 Query 879 GGCTTT 884 || ||| Sbjct 9094 GGATTT 9089 >seq192907 Length=1861 Score = 104 bits (114), Expect = 3e-19 Identities = 173/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 645 AAATCTGAGGTCTACTATTATTGGGGTCCACCAGGAACCGGAAAATCAAAAACCGCTCTG 704 ||| | || ||||| || || ||||| ||||||| |||||| ||| | || || Sbjct 915 AAAACGGAAGTCTAATACTACTGGGGAGAACCAGGAGTCGGAAAGTCATCTAGAGCCTTG 974 Query 705 GAAAAAGCAACCGCCTACAATACCGACTCCATCTATTATAAACCGCGTGGTCTATGGTGG 764 | | | || || || ||| | ||| | |||| ||||||| || | ||||||| Sbjct 975 GCAGAGGCTACTGCTTACGGTG--GAC-CTATCTTCTATAAACAACGAGAAAAATGGTGG 1031 Query 765 GATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATAAAATAC 824 || || || || | || | | |||||||||||||| ||||| |||||||| ||| Sbjct 1032 GACGGATACGAATACCAACCAAATGTCATCATCGACGATTTCTACGGATGGATCGCATAT 1091 Query 825 GACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAGGAGGCTTT 884 ||||| ||||| |||||||| || ||||||| ||| || | || |||||||| ||| Sbjct 1092 GACGAGCTTCTCAAAATATGCGATAGATATCCTTACCGCGTACCCATCAAAGGAGGATTT 1151 Query 885 GAAGAATT 892 | |||| Sbjct 1152 AGAAAATT 1159 >seq55868 Length=5588 Score = 102 bits (112), Expect = 9e-19 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 758 ATGGTGGGATGGTTATCAACAGCA-GACTAGCGTCATCATCGACGACTTCTATGGATGGA 816 ||||||||| || ||| || | || ||| | | |||||||||| ||||| || ||||||| Sbjct 1755 ATGGTGGGACGGATATGAATACCAAGACAA-CATCATCATCGATGACTTTTACGGATGGA 1697 Query 817 TAAAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAG 876 || | | ||||||||||||||||||||||| ||||| || || || | || |||| Sbjct 1696 TACCACATGACGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATCAAAG 1637 Query 877 GAGGCTTT 884 |||||||| Sbjct 1636 GAGGCTTT 1629 >seq32853 Length=7534 Score = 100 bits (110), Expect = 3e-18 Identities = 171/246 (70%), Gaps = 13/246 (5%) Strand=Plus/Minus Query 644 CAAATCTGAGGTCTACTATTAT--TGGGGTCCACCAGGAACCGGAAAATCAAAAACCGCT 701 |||| | ||||| | | ||||| ||||| ||||||| ||||| |||| || || Sbjct 6612 CAAAACAGAGGTATTCCATTATCATGGGG--CACCAGGTGTAGGAAAGTCAAGAAGAGCC 6555 Query 702 CTGGAAAAAGCAACCGCCTACAATACCGAC---TCCATCTATTATAAACCGCGTGGTCTA 758 |||||| |||| || ||| || ||||| | ||||| | || | Sbjct 6554 CTGGAAGAAGCTACT------AATGTCGGTGGATCCATTTTCTATAAGCAACGAGACAAG 6501 Query 759 TGGTGGGATGGTTATCAACAGCAGACTAGCGTCATCATCGACGACTTCTATGGATGGATA 818 ||||||||||| || || | ||| | || |||||||| ||||| || ||||||||| Sbjct 6500 TGGTGGGATGGCTACGAATATCAGGACAATGTTATCATCGATGACTTTTACGGATGGATA 6441 Query 819 AAATACGACGAACTTCTTAAAATATGTGACCGATATCCATACAAGGTTCAAATAAAAGGA 878 ||| | ||||||||||||||||||||| ||||| || || || | || |||||| Sbjct 6440 CCATATGGCGAACTTCTTAAAATATGTGATCGATACCCCTATCGAGTGCCTATTAAAGGA 6381 Query 879 GGCTTT 884 |||||| Sbjct 6380 GGCTTT 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5434402700952